LOC103034269 (LOC108438618,LOC108414439)


Basic Information

Item Value
gene id LOC103034269
gene name LOC108438618,LOC108414439
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 7434144 ~ 7455982 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682334.1
TATCTAGTTAGGAGCATGTGGTGTAAGAGAATTTTGCAGCCGTCTCTTCCTGGAGAACTGGAGGTCATGCGTTTCACTTCCCCTTTCACTCAGCTGAGCTACCAGTTCCAAAACTGCTCCTGCACTGACAGATAGAGAAACACAGAGCGAGAGAGTCCACACATCACTTCATTACAacaaaacaagGCTTAATTCAATTTAGGCCCCATCAGGAAGCCAACCCCTCAGTCATGTGGATCCAGCCTGTGCTGCTGATAAACACACAACTCTTTCAGAGCTTCCCAAAACCCGACTCAGACACCACCTAACCCAGCAGCAGAGGAGCAGGAGTACAGCTAGCGGTCATATGATCAGAGGCCAGAGTGGACATGGTGACCCTGTGGTGCGTGCTGACTCTGCTGGCCTTGCTGTCTCCGGAGGCATTTGGAACTAATGCTGGAGTTAAAgtgaaagtgactcaaaagGGCTTAGAATATGGTCGCCAAATCGGGATTGCCGCCCTGCAGGAGAAGTTCAAAACCATCAAGATTCCAGACCTGAGCGGGTCAGAGAGTGTGTCTCCTATCGGCAAAGTCTCGTACAGTCTGACCGGGATACAGATTTTAAATCTGGGGCTGCCTGAGTCTAAGCTGGGGTTGGTACCTGGTACTGGAGTCAGCCTGTCCATCGCCAATGCCTTCATCAACCTGCACGGCAACTGGAGGGTAAAATACCTGCGGATAATAAAGGACAGCGGCTCCTTTGATCTGGCTGTGAGCGGACTGACCATCTCCACCACCATCGCTGTTAAGAGTGACGACACAGGCCGGCCGGCGGTCAGCGGGGTCAACTGTGCAGCCACTGTCGGCCAAGCCAGGGTCAAATTTCATGGCGGTGCCAGCTGGCTGTATAATCTGTTTAGTGACTACATTGACAAGGCTCTGCGCAGTGCCCTGCAGAAACAGATCTGTCCTCTGGTGTCTGATGCCATAAATGAAATGAACCCCCGCCTGAAAACATTAAACGTTTTAGCACAAGTTGACAAGTATGCTGAGATTGAATATTCCATGGTGGAGTCACCTGCCGTGTCTAACTCCAGCATTGATCTCAGTTTAAAGGGTGAATTCTACAATATTGGACAGCATAAGGAGCCTCCTTTCTCCCCCTCCCCATTCTCCCTGCCCCCTCAGGACAGTAATATGCTGTACATCGGACTCTCCGCCTTCACCCCCAACTCAGCCGGCTTCGTTTACAACAGCGCCGGAGCCCTCAGCCTCTACATCACCGACGACATGATACCTCCAAGTTCTCCCATTCGACTCAACACAAGGACGTTCGGAGCCTTCATTCCTCaaATTGCTAAGCTGTATCCAGGTCTGATGATGAAGCTCCTGGTGAAGACAGCGAAGGAGCCAACCATCATATTCAAGCCCAACTACGTGACTCTGCAAGTGAACAGCACGGTCACGGCTTACGCTATTCAGCCCAACACCACGCTGTCTCCTCTCTTCATCCTCAACGTGgacgccaGCGTGAGCGCCAAGATTTATGTGACTGGAATTAAAGTGGCGGGAGCTCTGACCCTTAATCAAATTGACATGACCTTGGGAACCAGCTATGTGGGACCATTCCAGGTCAAATCACTTGACAACATCTTCCTAATGGTACTGAAAGTCGCAGTCATCCCCAAGGTTAATGCCCGCCTTCAGCAAGGTTATCCTCTGCCTGCCATCGGAAAGATGAATCTGGTGAACACTCAGCTTCAGATTCTGAAGGACTACATGTTGATCGGGACAGACGTTCAGTTCACATGATGAGCCATACTTCATGCCCACAACTGTTAAATTAGTGTATTAATTTCTCTAATGACATTCCCAATGAATATAAAGAAATGATTTTCAAATGAAGGAAATCTGTTCAGACAGATCATTTAATAGCACTGTTATAATACAAGGTCTATGTAAGATTTCAAATAAGAttccaaacaaataaaaagtgattgttTTCCAAA
>XM_022682335.1
TATCTAGTTAGGAGCATGTGGTGTAAGAGAATTTTGCAGCCGTCTCTTCCTGGAGAACTGGAGGTCATGCGTTTCACTTCCCCTTTCACTCAGCTGAGCTACCAGTTCCAAAACTGCTCCTGCACTGACAGATAGAGAAACACAGAGCGAGAGAGTCCACACATCACTTCATTACAacaaaacaagGCCAGAGTGGACATGGTGACCCTGTGGTGCGTGCTGACTCTGCTGGCCTTGCTGTCTCCGGAGGCATTTGGAACTAATGCTGGAGTTAAAgtgaaagtgactcaaaagGGCTTAGAATATGGTCGCCAAATCGGGATTGCCGCCCTGCAGGAGAAGTTCAAAACCATCAAGATTCCAGACCTGAGCGGGTCAGAGAGTGTGTCTCCTATCGGCAAAGTCTCGTACAGTCTGACCGGGATACAGATTTTAAATCTGGGGCTGCCTGAGTCTAAGCTGGGGTTGGTACCTGGTACTGGAGTCAGCCTGTCCATCGCCAATGCCTTCATCAACCTGCACGGCAACTGGAGGGTAAAATACCTGCGGATAATAAAGGACAGCGGCTCCTTTGATCTGGCTGTGAGCGGACTGACCATCTCCACCACCATCGCTGTTAAGAGTGACGACACAGGCCGGCCGGCGGTCAGCGGGGTCAACTGTGCAGCCACTGTCGGCCAAGCCAGGGTCAAATTTCATGGCGGTGCCAGCTGGCTGTATAATCTGTTTAGTGACTACATTGACAAGGCTCTGCGCAGTGCCCTGCAGAAACAGATCTGTCCTCTGGTGTCTGATGCCATAAATGAAATGAACCCCCGCCTGAAAACATTAAACGTTTTAGCACAAGTTGACAAGTATGCTGAGATTGAATATTCCATGGTGGAGTCACCTGCCGTGTCTAACTCCAGCATTGATCTCAGTTTAAAGGGTGAATTCTACAATATTGGACAGCATAAGGAGCCTCCTTTCTCCCCCTCCCCATTCTCCCTGCCCCCTCAGGACAGTAATATGCTGTACATCGGACTCTCCGCCTTCACCCCCAACTCAGCCGGCTTCGTTTACAACAGCGCCGGAGCCCTCAGCCTCTACATCACCGACGACATGATACCTCCAAGTTCTCCCATTCGACTCAACACAAGGACGTTCGGAGCCTTCATTCCTCaaATTGCTAAGCTGTATCCAGGTCTGATGATGAAGCTCCTGGTGAAGACAGCGAAGGAGCCAACCATCATATTCAAGCCCAACTACGTGACTCTGCAAGTGAACAGCACGGTCACGGCTTACGCTATTCAGCCCAACACCACGCTGTCTCCTCTCTTCATCCTCAACGTGgacgccaGCGTGAGCGCCAAGATTTATGTGACTGGAATTAAAGTGGCGGGAGCTCTGACCCTTAATCAAATTGACATGACCTTGGGAACCAGCTATGTGGGACCATTCCAGGTCAAATCACTTGACAACATCTTCCTAATGGTACTGAAAGTCGCAGTCATCCCCAAGGTTAATGCCCGCCTTCAGCAAGGTTATCCTCTGCCTGCCATCGGAAAGATGAATCTGGTGAACACTCAGCTTCAGATTCTGAAGGACTACATGTTGATCGGGACAGACGTTCAGTTCACATGATGAGCCATACTTCATGCCCACAACTGTTAAATTAGTGTATTAATTTCTCTAATGACATTCCCAATGAATATAAAGAAATGATTTTCAAATGAAGGAAATCTGTTCAGACAGATCATTTAATAGCACTGTTATAATACAAGGTCTATGTAAGATTTCAAATAAGAttccaaacaaataaaaagtgattgttTTCC
>XM_022682336.1
TATCTAGTTAGGAGCATGTGGTGTAAGAGAATTTTGCAGCCGTCTCTTCCTGGAGAACTGGAGGTCATGCGTTTCACTTCCCCTTTCACTCAGCTGAGCTACCAGTTCCAAAACTGCTCCTGCACTGACAGATAGAGAAACACAGAGCGAGAGAGTCCACACATCACTTCATTACAacaaaacaagAGCTTCCCAAAACCCGACTCAGACACCACCTAACCCAGCAGCAGAGGAGCAGGAGTACAGCTAGCGGTCATATGATCAGAGGCCAGAGTGGACATGGTGACCCTGTGGTGCGTGCTGACTCTGCTGGCCTTGCTGTCTCCGGAGGCATTTGGAACTAATGCTGGAGTTAAAgtgaaagtgactcaaaagGGCTTAGAATATGGTCGCCAAATCGGGATTGCCGCCCTGCAGGAGAAGTTCAAAACCATCAAGATTCCAGACCTGAGCGGGTCAGAGAGTGTGTCTCCTATCGGCAAAGTCTCGTACAGTCTGACCGGGATACAGATTTTAAATCTGGGGCTGCCTGAGTCTAAGCTGGGGTTGGTACCTGGTACTGGAGTCAGCCTGTCCATCGCCAATGCCTTCATCAACCTGCACGGCAACTGGAGGGTAAAATACCTGCGGATAATAAAGGACAGCGGCTCCTTTGATCTGGCTGTGAGCGGACTGACCATCTCCACCACCATCGCTGTTAAGAGTGACGACACAGGCCGGCCGGCGGTCAGCGGGGTCAACTGTGCAGCCACTGTCGGCCAAGCCAGGGTCAAATTTCATGGCGGTGCCAGCTGGCTGTATAATCTGTTTAGTGACTACATTGACAAGGCTCTGCGCAGTGCCCTGCAGAAACAGATCTGTCCTCTGGTGTCTGATGCCATAAATGAAATGAACCCCCGCCTGAAAACATTAAACGTTTTAGCACAAGTTGACAAGTATGCTGAGATTGAATATTCCATGGTGGAGTCACCTGCCGTGTCTAACTCCAGCATTGATCTCAGTTTAAAGGGTGAATTCTACAATATTGGACAGCATAAGGAGCCTCCTTTCTCCCCCTCCCCATTCTCCCTGCCCCCTCAGGACAGTAATATGCTGTACATCGGACTCTCCGCCTTCACCCCCAACTCAGCCGGCTTCGTTTACAACAGCGCCGGAGCCCTCAGCCTCTACATCACCGACGACATGATACCTCCAAGTTCTCCCATTCGACTCAACACAAGGACGTTCGGAGCCTTCATTCCTCaaATTGCTAAGCTGTATCCAGGTCTGATGATGAAGCTCCTGGTGAAGACAGCGAAGGAGCCAACCATCATATTCAAGCCCAACTACGTGACTCTGCAAGTGAACAGCACGGTCACGGCTTACGCTATTCAGCCCAACACCACGCTGTCTCCTCTCTTCATCCTCAACGTGgacgccaGCGTGAGCGCCAAGATTTATGTGACTGGAATTAAAGTGGCGGGAGCTCTGACCCTTAATCAAATTGACATGACCTTGGGAACCAGCTATGTGGGACCATTCCAGGTCAAATCACTTGACAACATCTTCCTAATGGTACTGAAAGTCGCAGTCATCCCCAAGGTTAATGCCCGCCTTCAGCAAGGTTATCCTCTGCCTGCCATCGGAAAGATGAATCTGGTGAACACTCAGCTTCAGATTCTGAAGGACTACATGTTGATCGGGACAGACGTTCAGTTCACATGATGAGCCATACTTCATGCCCACAACTGTTAAATTAGTGTATTAATTTCTCTAATGACATTCCCAATGAATATAAAGAAATGATTTTCAAATGAAGGAAATCTGTTCAGACAGATCATTTAATAGCACTGTTATAATACAAGGTCTATGTAAGATTTCAAATAAGAttccaaacaaataaaaagtgattgttTTCC

Function

NR:

description
PREDICTED: bactericidal permeability-increasing protein-like

GO:

id name namespace
GO:0008289 lipid binding molecular_function

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682334.1 True 1990 mRNA 0.49 17 7434144 7455982
XM_022682335.1 False 1817 mRNA 0.48 16 7434147 7455982
XM_022682336.1 False 1898 mRNA 0.49 17 7434147 7455982

Neighbor

gene id symbol gene type direction distance location
LOC103035242 NA coding downstream 55553 7376559 ~ 7378591 (-)
LOC103036072 phactr3,LOC108254891 coding downstream 90923 7229473 ~ 7343221 (-)
LOC103037403 NA coding downstream 228753 7197200 ~ 7205391 (-)
hp1bp3 hp1bp3 coding downstream 368058 7053226 ~ 7066086 (-)
sh2d5 sh2d5 coding downstream 383843 7033104 ~ 7050301 (-)
LOC103022868 rap1b,rap1a,rap1ab,LOC105901888,LOC106566052,LOC107560426,LOC107742898 coding upstream 665755 8121737 ~ 8139529 (-)
LOC103046978 LOC108414459 coding upstream 831936 8287918 ~ 8326276 (-)
LOC111195367 LOC106511942 coding upstream 2280366 9736348 ~ 9738497 (-)
c22h1orf158 LOC103033413 coding upstream 2388136 9844118 ~ 9899592 (-)
LOC103033950 NA coding upstream 2446978 9902960 ~ 9928421 (-)
G187931 srsf6,LOC107654800,LOC107722005,LOC103156038,LOC108254894 non-coding downstream 72930 7354247 ~ 7361214 (-)
G187933 acot8,LOC107730625,LOC107670930 non-coding downstream 80841 7350011 ~ 7353303 (-)
G187928 NA non-coding downstream 202300 7231122 ~ 7231844 (-)
G187881 NA non-coding downstream 245692 7188078 ~ 7188452 (-)
G187880 NA non-coding downstream 246106 7187790 ~ 7188038 (-)
G187965 NA non-coding upstream 1796 7457778 ~ 7460141 (-)
G187968 NA non-coding upstream 9740 7465722 ~ 7465984 (-)
G187969 NA non-coding upstream 11111 7467093 ~ 7467324 (-)
G188016 NA non-coding upstream 234671 7690653 ~ 7691321 (-)
G188030 NA non-coding upstream 284243 7740225 ~ 7746500 (-)
ghrh ghrh,LOC103034597,LOC108438619 other downstream 14338 7409122 ~ 7419806 (-)
G187946 mybl2,mybl2b other downstream 43118 7388397 ~ 7391026 (-)
pdrg1 pdrg1 other downstream 240892 7188616 ~ 7193252 (-)
LOC111195363 snrpe other downstream 451304 6977651 ~ 6982840 (-)
svbp svbp other downstream 1911223 5518793 ~ 5522921 (-)
LOC111195437 NA other upstream 2495102 9951084 ~ 9956317 (-)
G188898 NA other upstream 3534835 10990817 ~ 10991394 (-)
G189055 NA other upstream 4587931 12043913 ~ 12044293 (-)
eogt eogt,LOC107729408 other upstream 4704560 12160542 ~ 12178610 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other upstream 4842067 12298049 ~ 12395532 (-)

Expression


Co-expression Network