G188030


Basic Information

Item Value
gene id G188030
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 7740225 ~ 7746500 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU254988
CCATTTAGACTTAATGCAAATACAGCAAAAATCACACCATCAAGCACTAGGTGACCATGAACGAGTAGAGAAGGAGAGCAGGGTGAACTGAAGGGAGGAGGACAGTATTATTGGGAAGGCCAATGCTTCATGCCATGCACAGAGCATCAGATACTGAACTGGGTCCAAATCCTTTGGTGCTTGGTCTCCACTCTTATCCTATCCATCGCAGGACTGGCTGCTGTTCGTCGGTACATACAGGCTCGGTCAGCAGGAGACTCCAGCAGATCCGTACTGCACCTCTTACATCATGAGCCACGGTGAAAACGGAGAACCTCTCTGTGCAAGTATATACAAGGCACTTTTGCCTTACTCCAGTGCAACAACACTCATCTGtccctccatcatcatcatcatcatcatcattattattattatttaaatctttatttcagAGGATCCCACCATTTGTCCATTGCCTCGAGCGGCAGCGACTCTGACGGTAAGGCACCCGATATTGGTATGACGGTCCTCTCCCGCGTAACACTGTTAACAGTCCCGGCGTGTGGAGTCGCAATAATCACATTATTTACATGTACATGTAACTCACATTACATGTAAATTGGATTTACATTATATTCACAAGATTGCACGTTTTCCATTTTTGCTTGATTGATGAAAAACATCAGTATTCTTCTGTCCATGCAAACCACACCATCCCTCCCTTCAACACACCCAAACCAAAAGCGTCACACTCTTTTAAAACAAgtcaacaaaacataaaaaaaatgtttcttttataaatcatcGAAAGTGGATTTAATACAAGCTTGTGAGAGCTTGccgtgaacacacacacacaaacacactcacaaaataaatcccaaaaaacgcaaaaaaaattataaacaataaTCAGGAATTCCAGTGATGTCAGACTAAAAACAATAGGAATTATAAAAATCCactactgttaaaaagtttggaatcacttctattaacttaattaaatttatttaactttttccaAATAAGCCcccaaatatttatattataatataatatattttacttattgTCTCATGAGTGAATGTCTCTTTTTTAAAAGTTCTGGACTTAAGTTTTCTAGTTATTGATCAATAGTATCATCATGTTTAAAAGTAAGGTGAATGGGCTAAGATTTGGGTTTctatagagtgtgtatattagcattagcattagcattatacCCCACTCAAAACATCTTTTTGACAACAggtttatacacttttttatattttatgggATGTTTTCATGTTCCACTGTAGTATGACTCACTAACTGAGCTCTTTTAATTGCCTTCTGATAACTATCCTCAGTGCAACCAGCTGTACAATATGTGCTCACTACATCAAAAAGTGTATCACTAGTGAGTGTTTGCTCACTaggatgtgtgtgtgcctgtgtgtaaatgagtgagtgagtaagtgtgtgtttactgcacaAATGGTGAGTATGGTTGTCTTTGTCTCTTCAATGCCATGGACATGTGTGCTATTGATTATTTTCACAAGAAGTTCATGCATAAAAGCAgtgattccaaacttttgaacagtaGTGATCTTAAGTGGCTTTCGTTTTCACAGATAAAACTCAAACAGCAGATCTGACACACCCACAGGGTTCCCCCACCCCCTCTCCTCATTCTCAGTGAGCAGGAATAAGAAGGCAGAGACAAAGCCTTGGCTaccgaaagagagagagacgagcgcaaataaatggccataaaaagaaagaaaatgggagaaaaaaacaaacaaacaaacaaacaaaaaaaaaaacagctgcagtGACAGGTGACAGCAAGCAGTAAGAGCTGACCATTACCCTGTCTCAGGCTGACCTGACCTCATATCTCCCTCGAAGTCATGCATGAAGGAGAAAGCGAAGGCAGAATCTTCACCACGACCCTTTCAGAGGACAGAGCAGAAGAGTATTCCACAGTGAGCAGgtaggattaggattaggattgGGATTAGGGGGCGAAAATCAGCAAACCTCTCGGAGGGAGGGTCCGAAACAACGTGCAGTAGACTCTGGAGACTGACGCTGACCACACAGGATGGACTCTGCATATGACATGGACACTGGGTCACTTTTCCCTCCTTAGccatttatttcagtcattttggtCATTTCTGAAGTTCTCTGTATGCTGGAGTTTCTGATAATCCACAGTAATAACAAGCTAAACTAgagaataaactctttatacAACATTTATACAATTCAAGGGCGAGACTGCAGCCTTGTTCCTTTTTCTGAAGTCATGCTAGTCGGGAATAtgagtagtagtaatagtagtagtagtattattagaCGAGCTCTGTGTGCGCTAGTATATACTGGGTTTAGACAGGTGATACGGTCCAGTGCGCTGCTGGCTGGCTGGGTTGACGTTGTGATGTTGGGATCTCCAGGTCGCCTTGATTAAACGAGTCTCACACAGTCTGGGCtgacagcagagggaagaagaggaggaggaggacttgTAGGCTGtaaagtgaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaagtgtgtgtattattGGTCTGTATTGTTCATACAGTAGCATAGGTTAGCCTCTCAGCTGGGTGTAAGGGTTGGGCCTGGACGTCATGCTCCTCTCCTCACTCTCTCAGTTCCATTTCATCAGGCCGTCTGTGGATTTCAGGACTGCACACATAGaggcagac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254988 True 2720 lncRNA 0.41 2 7740225 7746500

Neighbor

gene id symbol gene type direction distance location
LOC103034269 LOC108438618,LOC108414439 coding downstream 284243 7434144 ~ 7455982 (-)
LOC103035242 NA coding downstream 361634 7376559 ~ 7378591 (-)
LOC103036072 phactr3,LOC108254891 coding downstream 397004 7229473 ~ 7343221 (-)
LOC103037403 NA coding downstream 534834 7197200 ~ 7205391 (-)
hp1bp3 hp1bp3 coding downstream 674139 7053226 ~ 7066086 (-)
LOC103022868 rap1b,rap1a,rap1ab,LOC105901888,LOC106566052,LOC107560426,LOC107742898 coding upstream 375237 8121737 ~ 8139529 (-)
LOC103046978 LOC108414459 coding upstream 541418 8287918 ~ 8326276 (-)
LOC111195367 LOC106511942 coding upstream 1989848 9736348 ~ 9738497 (-)
c22h1orf158 LOC103033413 coding upstream 2097618 9844118 ~ 9899592 (-)
LOC103033950 NA coding upstream 2156460 9902960 ~ 9928421 (-)
G188016 NA non-coding downstream 48904 7690653 ~ 7691321 (-)
G187969 NA non-coding downstream 272901 7467093 ~ 7467324 (-)
G187968 NA non-coding downstream 274241 7465722 ~ 7465984 (-)
G187965 NA non-coding downstream 280084 7457778 ~ 7460141 (-)
G187931 srsf6,LOC107654800,LOC107722005,LOC103156038,LOC108254894 non-coding downstream 379011 7354247 ~ 7361214 (-)
G188042 NA non-coding upstream 134789 7881289 ~ 7891352 (-)
G188055 NA non-coding upstream 302756 8049256 ~ 8050096 (-)
G188066 NA non-coding upstream 344932 8091432 ~ 8091687 (-)
G188098 NA non-coding upstream 491228 8237728 ~ 8239604 (-)
G188109 NA non-coding upstream 561910 8308410 ~ 8322833 (-)
ghrh ghrh,LOC103034597,LOC108438619 other downstream 320419 7409122 ~ 7419806 (-)
G187946 mybl2,mybl2b other downstream 349199 7388397 ~ 7391026 (-)
pdrg1 pdrg1 other downstream 546973 7188616 ~ 7193252 (-)
LOC111195363 snrpe other downstream 757385 6977651 ~ 6982840 (-)
svbp svbp other downstream 2217304 5518793 ~ 5522921 (-)
LOC111195437 NA other upstream 2204584 9951084 ~ 9956317 (-)
G188898 NA other upstream 3244317 10990817 ~ 10991394 (-)
G189055 NA other upstream 4297413 12043913 ~ 12044293 (-)
eogt eogt,LOC107729408 other upstream 4414042 12160542 ~ 12178610 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other upstream 4551549 12298049 ~ 12395532 (-)

Expression


Co-expression Network