G187931 (srsf6,LOC107654800,LOC107722005,LOC103156038,LOC108254894)


Basic Information

Item Value
gene id G187931
gene name srsf6,LOC107654800,LOC107722005,LOC103156038,LOC108254894
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 7354247 ~ 7361214 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU254862
AAAACTTCAACTGTTCTCAGCACATTCTACCAATGTCTAGTTTTACATGGATATGTGTGGCTTGAATTCCTGTATAAGAAAGGTTATAATCATGGAGGCAGGAAATTGATCATCCTACACCCAGTAATTTGTATTAAATCTACAATACATATGCCCTTccatatacacaatatacagacCTAAGTACTTTTTTGCTGACCTAAATATTGCTCATTGCGCTTGCTTTACAAGAAAACTTTAAACCAGGCCTGTCAAAATAACCTTGTTTGGATGATATACATTATCCAATAATAACTGTAACTGAAAGACAACTTAATCCCACTGCTCACGTTGCATAATACAATTACACCATAATAAGCACACAAAATGTTCAATAGTTTGAAAAGCTTTGACTTTGTGCACCTAGGCTAGTCCACCCTGTGTTTATGGAGGCACTGATGTATCAATCACTGCATGACTTTGCTAAAATGAGGTGCATTCATGCAtacgtaaaaaaaaacccaaaaaaaacaccatgtccacaaaatgaaagaaaagggAGGTTAGCAAAAATAATTGTGCCGACCCATATAAATGAAGATGATTGATGAGCCAAGAACGTAAAACAACAAACCACTCATAATTGTAAATGGGTGGCTGCCAACAACCCACAATTTCAAATGAAAGTGCAACACTCTGCATACAATAGAAAATCAACCatgtttatttaactaaaacattGCAGATTACTCaatcaatttaaaaatgaaacaggACATACATGGAATAAATTCCTACAACTTCAATCCTCAAAAATGCCAAAAGCActaacaagaagaaaaaaaaggaaaattactGTACAGTGAGTCAAGCCATTCTATTACTTAAACCAAGCTACTCCAGGTTTACTTAACAGATGACTAATGAAGACATTTGCAGTCAGGCTTTTTTCCAGCCACATGAAATGCTTACATTTCAGTGAAACATTGCAAGACCATCCTTTTAAATTTACCAATTTGCACAGGAAGGCTACTCAATTCAAAATAGCTCAAGCAAATCCTTATAAAGAAGGGAAACTGAGGAGGAGGGGTCCGGTGTATTACTGTCtaatatgcatttttaatatttacaattCATCATCAAATCCTTTGTTTTCATGCACTGTTGAAAACGTGGTTTTATCTACTCTGAAGCACCAGTGAAGTGCTCTGAAAATAGTCAAAgcctattattatttatttaaaaaaaaaaaaacctagtCAGGCATCAATGCAAGCTCAGCCCCTCCAATAGCTTATGAATGAGACCTTTAGTCCTGTGAGGCAGATCTAGAACGAGAACGGGACTTTGATCGTGAAGGAGAACGGGACACTGAACGTTTGGCAGGTGATTTGGAACGGTCACGATCCTCTTGGGGAGAAGGAGAGCGTGAGGCAGACTTCGGCCGCTCGCCATTTCCGTTTTCCATCGGTGATGCTGAGCGGCTGCGTGACTTTTTGCTCACAGACTGCTCCTTTGATCGGCTTCTAGAACCTCGCTCAGATTTGGGCTTCGAGTGACTCTTGGATCGGGACTTGCGGCTGTCAGAACGGGAGCGTGACTTGTGACTTGCTGAGCGACTGCGAGACTTTCGGGTGCGAGAGCGAGAACGGGACTTCTTGGACCGAGACTTAGCAGGAGACTTTGAGTGGGACTTTCTCCTAGACCTGGAGCGGGACTTGCGGCCAGACTTTGAACGAgagcGAGCGAGACCTTGAACGGCTTCGTGAGCTCCTGCTCCTCCGGCTTCTGCTACGGGAGCGGCGCCTGCTACGAGACCTGGATCTGCTACCAGAGTAAGAACGGCGACGTTTAGGCTTGTCCTCCACAAGACGAATTTTTCTGCCATTGATATCAGTGCCATCCAACTTGTCCACTGCTCTTCTCAAATCAGAGTAACTGCGGAACTCAATCACTCCCTCGTTGGGGCGTTCTTTGTGGGCATCAGCATAGGTCACCTCACCAGCCTGCCGCATAAAGTCCTTAAGGTCCTGCCAGCTGCAACGACTGGACAAATTTTCCACAATTAGCCGGTACTCTGTGCGCACGGGTGGTCCATACTTATCTCGACCAGAGCGGCTTCTGCTGCTGTAACCACTACTACCACTGCGTCCACCACCCCCATAACCCCCACCATATCCATCTCTGTCCCGCCGTGGTCCTCTTGCATGCTCAACTAGGACACGCTCACCACAGAGCTCTTTGCCATTCAGTTCGTACACAGCATCGTCAGCATCACGGGTGTCCTCAAATTCAACAAAGCCGTACCCGTTCTTCAGATCGATCTCCAGCAGCTTCCCGTAGCCGCTGAAAAAGCGCTGAATGTCCTTCTCCCGGACGTGGTAGCTCAGCCTGCCCACGTAAACACGCGGCATTTTTGCAAATAACCTGCTTTTTCCTCACCAATGAACAAATGAACTGGATAACACTCAGAACAAAGCTCGGCCGTCCGCTGCTCTCCGCgcgtgagtgtgagtgaggaT
>TU254863
AAAACTTCAACTGTTCTCAGCACATTCTACCAATGTCTAGTTTTACATGGATATGTGTGGCTTGAATTCCTGTATAAGAAAGGTTATAATCATGGAGGCAGGAAATTGATCATCCTACACCCAGTAATTTGTATTAAATCTACAATACATATGCCCTTccatatacacaatatacagacCTAAGTACTTTTTTGCTGACCTAAATATTGCTCATTGCGCTTGCTTTACAAGAAAACTTTAAACCAGGCCTGTCAAAATAACCTTGTTTGGATGATATACATTATCCAATAATAACTGTAACTGAAAGACAACTTAATCCCACTGCTCACGTTGCATAATACAATTACACCATAATAAGCACACAAAATGTTCAATAGTTTGAAAAGCTTTGACTTTGTGCACCTAGGCTAGTCCACCCTGTGTTTATGGAGGCACTGATGTATCAATCACTGCATGACTTTGCTAAAATGAGGTGCATTCATGCAtacgtaaaaaaaaacccaaaaaaaacaccatgtccacaaaatgaaagaaaagggAGGTTAGCAAAAATAATTGTGCCGACCCATATAAATGAAGATGATTGATGAGCCAAGAACGTAAAACAACAAACCACTCATAATTGTAAATGGGTGGCTGCCAACAACCCACAATTTCAAATGAAAGTGCAACACTCTGCATACAATAGAAAATCAACCatgtttatttaactaaaacattGCAGATTACTCaatcaatttaaaaatgaaacaggACATACATGGAATAAATTCCTACAACTTCAATCCTCAAAAATGCCAAAAGCActaacaagaagaaaaaaaaggaaaattactGTACAGTGAGTCAAGCCATTCTATTACTTAAACCAAGCTACTCCAGGTTTACTTAACAGATGACTAATGAAGACATTTGCAGTCAGGCTTTTTTCCAGCCACATGAAATGCTTACATTTCAGTGAAACATTGCAAGACCATCCTTTTAAATTTACCAATTTGCACAGGAAGGCTACTCAATTCAAAATAGCTCAAGCAAATCCTTATAAAGAAGGGAAACTGAGGAGGAGGGGTCCGGTGTATTACTGTCtaatatgcatttttaatatttacaattCATCATCAAATCCTTTGTTTTCATGCACTGTTGAAAACGTGGTTTTATCTACTCTGAAGCACCAGTGAAGTGCTCTGAAAATAGTCAAAgcctattattatttatttaaaaaaaaaaaaacctagtCAGGCATCAATGCAAGCTCAGCCCCTCCAATAGCTTATGAATGAGACCTTTAGTCCTGTGAGGCAGATCTAGAACGAGAACGGGACTTTGATCGTGAAGGAGAACGGGACACTGAACGTTTGGCAGGTGATTTGGAACGGTCACGATCCTCTTGGGGAGAAGGAGAGCGTGAGGCAGACTTCGGCCGCTCGCCATTTCCGTTTTCCATCGGTGATGCTGAGCGGCTGCGTGACTTTTTGCTCACAGACTGCTCCTTTGATCGGCTTCTAGAACCTCGCTCAGATTTGGGCTTCGAGTGACTCTTGGATCGGGACTTGCGGCTGTCAGAACGGGAGCGTGACTTGTGACTTGCTGAGCGACTGCGAGACTTTCGGGTGCGAGAGCGAGAACGGGACTTCTTGGACCGAGACTTAGCAGGAGACTTTGAGTGGGACTTTCTCCTAGACCTGGAGCGGGACTTGCGGCCAGACTTTGAACGAgagCGAGAGCGAGACCTTGAACGGCTTCGTGAGCTCCTGCTCCTCCGGCTTCTGCTACGGGAGCGGCGCCTGCTACGAGACCTGTTACAGAAATGCTGGATCTGCTACCAGAGTAAGAACGGCGACGTTTAGGCTTGTCCTCCACAAGACGAATTTTTCTGCCATTGATATCAGTGCCATCCAACTTGTCCACTGCTCTTCTCAAATCAGAGTAACTGCGGAACTCAATCACTCCCTCGTTGGGGCGTTCTTTGTGGGCATCAGCATAGGTCACCTCACCAGCCTGCCGCATAAAGTCCTTAAGGTCCTGCCAGCTGCAACGACTGGACAAATTTTCCACAATTAGCCGGTACTCTGTGCGCACGGGTGGTCCATACTTATCTCGACCAGAGCGGCTTCTGCTGCTGTAACCACTACTACCACTGCGTCCACCACCCCCATAACCCCCACCATATCCATCTCTGTCCCGCCGTGGTCCTCTTGCATGCTCAACTAGGACACGCTCACCACAGAGCTCTTTGCCATTCAGTTCGTACACAGCATCGTCAGCATCACGGGTGTCCTCAAATTCAACAAAGCCGTACCCGTTCTTCAGATCGATCTCCAGCAGCTTCCCGTAGCCGCTGAAAAAGCGCTGAATGTCCTTCTCCCGGACGTGGTAGCTCAGCCTGCCCACGTAAACACGCGGCATTTTTGCAAATAACCTGCTTTTTCCTCACCAATGAACAAATGAACTGGATAACACTCAGAACAAAGCTCGGCCGTCCGCTGCTCTCCGCgcgtgagtgtgagtgaggaT
>TU254864
AAAACTTCAACTGTTCTCAGCACATTCTACCAATGTCTAGTTTTACATGGATATGTGTGGCTTGAATTCCTGTATAAGAAAGGTTATAATCATGGAGGCAGGAAATTGATCATCCTACACCCAGTAATTTGTATTAAATCTACAATACATATGCCCTTccatatacacaatatacagacCTAAGTACTTTTTTGCTGACCTAAATATTGCTCATTGCGCTTGCTTTACAAGAAAACTTTAAACCAGGCCTGTCAAAATAACCTTGTTTGGATGATATACATTATCCAATAATAACTGTAACTGAAAGACAACTTAATCCCACTGCTCACGTTGCATAATACAATTACACCATAATAAGCACACAAAATGTTCAATAGTTTGAAAAGCTTTGACTTTGTGCACCTAGGCTAGTCCACCCTGTGTTTATGGAGGCACTGATGTATCAATCACTGCATGACTTTGCTAAAATGAGGTGCATTCATGCAtacgtaaaaaaaaacccaaaaaaaacaccatgtccacaaaatgaaagaaaagggAGGTTAGCAAAAATAATTGTGCCGACCCATATAAATGAAGATGATTGATGAGCCAAGAACGTAAAACAACAAACCACTCATAATTGTAAATGGGTGGCTGCCAACAACCCACAATTTCAAATGAAAGTGCAACACTCTGCATACAATAGAAAATCAACCatgtttatttaactaaaacattGCAGATTACTCaatcaatttaaaaatgaaacaggACATACATGGAATAAATTCCTACAACTTCAATCCTCAAAAATGCCAAAAGCActaacaagaagaaaaaaaaggaaaattactGTACAGTGAGTCAAGCCATTCTATTACTTAAACCAAGCTACTCCAGGTTTACTTAACAGATGACTAATGAAGACATTTGCAGTCAGGCTTTTTTCCAGCCACATGAAATGCTTACATTTCAGTGAAACATTGCAAGACCATCCTTTTAAATTTACCAATTTGCACAGGAAGGCTACTCAATTCAAAATAGCTCAAGCAAATCCTTATAAAGAAGGGAAACTGAGGAGGAGGGGTCCGGTGTATTACTGTCtaatatgcatttttaatatttacaattCATCATCAAATCCTTTGTTTTCATGCACTGTTGAAAACGTGGTTTTATCTACTCTGAAGCACCAGTGAAGTGCTCTGAAAATAGTCAAAgcctattattatttatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaac

Function

symbol description
srsf6 Enables pre-mRNA binding activity. Involved in several processes, including mRNA splicing, via spliceosome; negative regulation of keratinocyte differentiation; and negative regulation of mRNA splicing, via spliceosome. Acts upstream of or within negative regulation of cell death; positive regulation of epithelial cell proliferation involved in lung morphogenesis; and regulation of alternative mRNA splicing, via spliceosome. Located in nuclear speck. Implicated in proliferative diabetic retinopathy and spermatogenic failure 3. Biomarker of Huntington's disease; clear cell renal cell carcinoma; colon adenocarcinoma; lung cancer; and skin cancer.

NR:

description
PREDICTED: serine/arginine-rich splicing factor 6-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254862 False 2501 lncRNA 0.44 7 7354247 7361214
TU254863 True 2517 lncRNA 0.44 7 7354247 7361214
TU254864 False 1254 lncRNA 0.34 2 7355489 7361214

Neighbor

gene id symbol gene type direction distance location
LOC103036072 phactr3,LOC108254891 coding downstream 11026 7229473 ~ 7343221 (-)
LOC103037403 NA coding downstream 148856 7197200 ~ 7205391 (-)
hp1bp3 hp1bp3 coding downstream 288161 7053226 ~ 7066086 (-)
sh2d5 sh2d5 coding downstream 303946 7033104 ~ 7050301 (-)
kif17 kif17,LOC108438632 coding downstream 323220 7007447 ~ 7031027 (-)
LOC103035242 NA coding upstream 15345 7376559 ~ 7378591 (-)
LOC103034269 LOC108438618,LOC108414439 coding upstream 72930 7434144 ~ 7455982 (-)
LOC103022868 rap1b,rap1a,rap1ab,LOC105901888,LOC106566052,LOC107560426,LOC107742898 coding upstream 760523 8121737 ~ 8139529 (-)
LOC103046978 LOC108414459 coding upstream 926704 8287918 ~ 8326276 (-)
LOC111195367 LOC106511942 coding upstream 2375134 9736348 ~ 9738497 (-)
G187933 acot8,LOC107730625,LOC107670930 non-coding downstream 944 7350011 ~ 7353303 (-)
G187928 NA non-coding downstream 122403 7231122 ~ 7231844 (-)
G187881 NA non-coding downstream 165795 7188078 ~ 7188452 (-)
G187880 NA non-coding downstream 166209 7187790 ~ 7188038 (-)
G187878 NA non-coding downstream 170194 7183826 ~ 7184053 (-)
G187965 NA non-coding upstream 96564 7457778 ~ 7460141 (-)
G187968 NA non-coding upstream 104508 7465722 ~ 7465984 (-)
G187969 NA non-coding upstream 105879 7467093 ~ 7467324 (-)
G188016 NA non-coding upstream 329439 7690653 ~ 7691321 (-)
G188030 NA non-coding upstream 379011 7740225 ~ 7746500 (-)
pdrg1 pdrg1 other downstream 160995 7188616 ~ 7193252 (-)
LOC111195363 snrpe other downstream 371407 6977651 ~ 6982840 (-)
svbp svbp other downstream 1831326 5518793 ~ 5522921 (-)
phf13 phf13 other downstream 1848500 5493412 ~ 5505747 (-)
vamp3 vamp3,LOC107582408,LOC107751179 other downstream 2364989 4974228 ~ 4989258 (-)
G187946 mybl2,mybl2b other upstream 27183 7388397 ~ 7391026 (-)
ghrh ghrh,LOC103034597,LOC108438619 other upstream 47908 7409122 ~ 7419806 (-)
LOC111195437 NA other upstream 2589870 9951084 ~ 9956317 (-)
G188898 NA other upstream 3629603 10990817 ~ 10991394 (-)
G189055 NA other upstream 4682699 12043913 ~ 12044293 (-)

Expression


Co-expression Network