LOC111195367 (LOC106511942)


Basic Information

Item Value
gene id LOC111195367
gene name LOC106511942
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 9736348 ~ 9738497 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682356.1
TACGCGAGACTTCAACACGCAGCAGGCTCTGGGACACACGCATGCGCGGAAAAGTTTCAAAACAAATGGAGGAAAGAGAGATTCAACCGGTCCCGTCTTCGTTGAAGGCAAAGATATGGAATCATTTTGGATTTTATCGAATGCCAGGGAAGACCGAGCTAGACATGAGCTTCATAGTGTGCAAGGTTTGCAAAATGAAGATCAAAAACTTCGGGAACACAACAAACGCACGGGCTCACATAACCAGGCACCACCCGGAGTTAAAAGATGCGGAGCAGAGTCAGCCACCAGCAGCAGACCAACGCACACTGCAGTCCTTCACCAAACTGTCCGCTAATTCGGACCAAAATAACCAGGTCTATCGCCTGCTTCATTGCCAAAGACTTACGACCTTACAGTGTGGTGGAGAACGAAGGCTTCACACACATGTTGCAGACAGCGGAGCCGCGGTACGCCATACCATCCCGTAAGTTTTTCACTGAGACAGCTGTGCCACAGCTTTACCAAGAAACTAAAAGGAAGGTCGCAAATACCTTAACCAAAACGACCAGAGTGGCACTAACATGTGATGCGTGGACATCAAGAGCAACCCAGTCTTTTGTAACATTTACAGCTCACTATATAACAGACACGTGGCTGCTCGAATCCCGTGTTTTGCAAACTCGTGTAATGCATGAAAGCCACACGGCTGTGAATGTTAATGCGATGTTTCACTCTGTTGCTGATGAATGGGAGCTCACTGTCACGGATCTGGTGATTGTGACTGATAATGCTGCCAACATGCTAGCTGCTACACAGATTGATAACTTGACACACATTACATGTTTCGCCCACACTTTAAACCTGGCTGCCCAACGAGCTCTGAAGCTACCTACAGTGTCAAGACTGCTTGGGAGGATCAGGCGCATTACTGGCTTCTTCCACCGCAGCACCGTCGCAAATCATGAACTGcaggagaaaaagaaacttCTACAGTTACCGCTGCACAAACTGAAAACTGATGTCCCTACACGATAGAACAGTGCGCTGGACATGATTGAGCGATTCCTAGAACAGCAGCCTGCTATATGTGCCGCGCTCCTCTCTCCACAGGTGAGAAGATGTGGAAGTGACATCTGTACACTAAGTGAAATGGACATCTCCACTGCTGAGGAAATAGCATCAGCACTGAAACCAGTCAAAGATGCAACCTGCATAATGTCTGAGGATTCTACACCTACACTCTCAGTTATTGCTCCTTTACATGCTCAGTTACTGCATGACACAGAGGCAGCTGGCGTTGCTGCTGAAACACCAGTTATCAGGGAAATCAAACTGGCAATCCACGAAGATCTGGTTAAAAGATACAGTTGTGCACGGAACAAGCACATGCTTTACACTTCTTCATTTTTGGACCCCAGATTTAAGGCCCTGCCTTTCCTCACCACGAAGGACCAGCTGGAAGTCCACGCCAATGTCCTTGCAGAGGCTGCAGCACTCCAGAGTCATGTGAACTCAGAGGCTGGTGAGGACAAGCCTGAGACACCACAGCCAGACCCAGAAGAAGCCACCCCCCCAAAAAGAAGGCCCTCTGCACTGTTTACTCTATTGGGCAAGACATTTACTGAGGTCAGTGTTGTCCATAAATCTACCAGCACCAGAGCCAAAGAGGAACTGAAGACATATCTGGAAGCCCCTCCACTTCCTCTGTCAGAGAACCCCCTCAGCTGGTGGAGAACCCATGAGACAGCTTTCCCTCTCTTGGCTAGACAGGCTAAACGCTAACTTGTGTATCCCTGGCACTAGTGTTGCAGCTGAGAGAGTGTTCTCCACTGCTGGGGATATAGTGACAGCACAGCGAAGCAGTCTTACTCCAGAACACGTGGATCAACTTCTGTTCCTACAAAAGAATCTGAATGTTGCACCTGCAAAGGAACAGTAATCTTGAACACTATTCATGTCCAGTTTTCTTTGAT

Function

NR:

description
PREDICTED: zinc finger BED domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682356.1 True 1955 mRNA 0.48 2 9736348 9738497

Neighbor

gene id symbol gene type direction distance location
LOC103046978 LOC108414459 coding downstream 1410072 8287918 ~ 8326276 (-)
LOC103022868 rap1b,rap1a,rap1ab,LOC105901888,LOC106566052,LOC107560426,LOC107742898 coding downstream 1596819 8121737 ~ 8139529 (-)
LOC103034269 LOC108438618,LOC108414439 coding downstream 2280366 7434144 ~ 7455982 (-)
LOC103035242 NA coding downstream 2357757 7376559 ~ 7378591 (-)
LOC103036072 phactr3,LOC108254891 coding downstream 2393127 7229473 ~ 7343221 (-)
c22h1orf158 LOC103033413 coding upstream 105621 9844118 ~ 9899592 (-)
LOC103033950 NA coding upstream 164463 9902960 ~ 9928421 (-)
LOC103046340 NA coding upstream 237236 9975733 ~ 9996465 (-)
aadacl4 NA coding upstream 260818 9999315 ~ 10021677 (-)
LOC111195372 LOC108410896,LOC108414677,LOC108416243 coding upstream 355826 10094323 ~ 10102893 (-)
G188225 NA non-coding downstream 546555 9189578 ~ 9189793 (-)
G188224 NA non-coding downstream 551237 9184911 ~ 9185111 (-)
G188223 NA non-coding downstream 562688 9173389 ~ 9173660 (-)
G188220 NA non-coding downstream 610812 9125091 ~ 9125536 (-)
G188218 NA non-coding downstream 671629 9064354 ~ 9064719 (-)
G188307 NA non-coding upstream 56280 9794777 ~ 9796290 (-)
G188317 NA non-coding upstream 91290 9829787 ~ 9830177 (-)
G188320 NA non-coding upstream 103294 9841791 ~ 9842018 (-)
LOC111195369 NA non-coding upstream 269533 10008030 ~ 10011025 (-)
G188446 NA non-coding upstream 329619 10068116 ~ 10069710 (-)
ghrh ghrh,LOC103034597,LOC108438619 other downstream 2316542 7409122 ~ 7419806 (-)
G187946 mybl2,mybl2b other downstream 2345322 7388397 ~ 7391026 (-)
pdrg1 pdrg1 other downstream 2543096 7188616 ~ 7193252 (-)
LOC111195363 snrpe other downstream 2753508 6977651 ~ 6982840 (-)
svbp svbp other downstream 4213427 5518793 ~ 5522921 (-)
LOC111195437 NA other upstream 212587 9951084 ~ 9956317 (-)
G188898 NA other upstream 1252320 10990817 ~ 10991394 (-)
G189055 NA other upstream 2305416 12043913 ~ 12044293 (-)
eogt eogt,LOC107729408 other upstream 2422045 12160542 ~ 12178610 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other upstream 2559552 12298049 ~ 12395532 (-)

Expression


Co-expression Network