G188307


Basic Information

Item Value
gene id G188307
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 9794777 ~ 9796290 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU255340
GTCCTCTGCCCCAAACACTTTCaactaacatttttatatttatgtttaaattcaCACAAACGATTCAACTCAAATCAATTCAAATCAGGTCACTAGCAAACATGTAAAGAGAAAGTTTCCACTGATATGGCCTAAAATCAACTTTGatctttatttaaagtaaaaatgaattattaagtGTTGTCTAGGCTGATATTGGTCTAAATGTTTGAATGATTTGgatgtaaacatttattttattctgatctTGCAAAAGAATAATAGCATCCAGAGACAGCAACAGTTAGGCTCTCCAAGATTTCCAATCTAGATTGCCCAAGATTGCCATCTCTCTGGAATTAaacaaaaagtatatttatcacaataaaaccattaaaaaaacactttagatacactatattgccaaaagtatttacaAGCATGTAAACGTGGGTCAATTTCCCTTCTTAACCCACaagattttatttctaaagttggGAGCATGAAATTGTCCGAAATCTCTTTGTGTGCTGAAGCTAGCTGAACTAAGAGTCCAAACCCAACTCCTGAAAAACAAGCACACACCATAATCTCCCCTAAAACAAACTTTACATTTGtcacaatgcagtcagacagaATCATTCTCCTGGCAACCACCAAACTCAGAATAATCCATCTGACACTTTGCATTGCGTTTAGTGATGTAAGGTTTAAATGGAGCTGATCGACCATGGAAACACATCCCATGAGTCTCTACTCTCTGCTGttcttgatctaatctgaagctacatgacgtttggaggtgtgtagtgattaactCTGAaggtacatgaagtttggaggtgtgtagtgatgaactctgaagctacatgaagtttggaggtgtgtagtgatgatctctgaagctacatgaagtttggaggtgtgtagtgatgaactctgaagctacatgaagtttggaggtgtgtagtgatgtagtgactgCAGAAAGTTGCAGAAAACTCTGtgcactacactgtaaaaaatgattttttgactttgtaaatttc
>TU255341
GTCCTCTGCCCCAAACACTTTCaactaacatttttatatttatgtttaaattcaCACAAACGATTCAACTCAAATCAATTCAAATCAGGTCACTAGCAAACATGTAAAGAGAAAGTTTCCACTGATATGGCCTAAAATCAACTTTGatctttatttaaagtaaaaatgaattattaagtGTTGTCTAGGCTGATATTGGTCTAAATGTTTGAATGATTTGgatgtaaacatttattttattctgatctTGCAAAAGAATAATAGCATCCAGAGACAGCAACAGTTAGGCTCTCCAAGATTTCCAATCTAGATTGCCCAAGATTGCCATCTCTCTGGAATTAaacaaaaagtatatttatcacaataaaaccattaaaaaaacactttagatacactatattgccaaaagtatttacaAGCATGTAAACGTGGGTCAATTTCCCTTCTTAACCCACaagattttatttctaaagttggGAGCATGAAATTGTCCGAAATCTCTTTGTGTGCTGAAGCTAGCTGAACTAAGAGTCCAAACCCAACTCCTGAAAAACAAGCACACACCATAATCTCCCCTAAAACAAACTTTACATTTGtcacaatgcagtcagacagaATCATTCTCCTGGCAACCACCAAACTCAGAATAATCCATCTGACACTTTGCATTGCGTTTAGTGATGTAAGGTTTAAATGGAGCTGATCGACCATGGAAACACATCCCATGAGTCTCTACTCTCTGCTGttcttgatctaatctgaagctacatgacgtttggaggtgtgtagtgattaactCTGAaggtacatgaagtttggaggtgtgtagtgatgaactctaaagctacatggagtttggaggtgtgtagtgatgacctctgaagctacatgaagtttggaggtgtgtagtgatgacctctgaagctacatgaagtttggaggtgtgtactgatgatgaactctgaagctacatgaagtttggaggtgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU255340 True 1028 lncRNA 0.36 2 9794777 9796290
TU255341 False 989 lncRNA 0.37 2 9795142 9796290

Neighbor

gene id symbol gene type direction distance location
LOC111195367 LOC106511942 coding downstream 56280 9736348 ~ 9738497 (-)
LOC103046978 LOC108414459 coding downstream 1468501 8287918 ~ 8326276 (-)
LOC103022868 rap1b,rap1a,rap1ab,LOC105901888,LOC106566052,LOC107560426,LOC107742898 coding downstream 1655248 8121737 ~ 8139529 (-)
LOC103034269 LOC108438618,LOC108414439 coding downstream 2338795 7434144 ~ 7455982 (-)
LOC103035242 NA coding downstream 2416186 7376559 ~ 7378591 (-)
c22h1orf158 LOC103033413 coding upstream 47828 9844118 ~ 9899592 (-)
LOC103033950 NA coding upstream 106670 9902960 ~ 9928421 (-)
LOC103046340 NA coding upstream 179443 9975733 ~ 9996465 (-)
aadacl4 NA coding upstream 203025 9999315 ~ 10021677 (-)
LOC111195372 LOC108410896,LOC108414677,LOC108416243 coding upstream 298033 10094323 ~ 10102893 (-)
G188225 NA non-coding downstream 604984 9189578 ~ 9189793 (-)
G188224 NA non-coding downstream 609666 9184911 ~ 9185111 (-)
G188223 NA non-coding downstream 621117 9173389 ~ 9173660 (-)
G188220 NA non-coding downstream 669241 9125091 ~ 9125536 (-)
G188218 NA non-coding downstream 730058 9064354 ~ 9064719 (-)
G188317 NA non-coding upstream 33497 9829787 ~ 9830177 (-)
G188320 NA non-coding upstream 45501 9841791 ~ 9842018 (-)
LOC111195369 NA non-coding upstream 211740 10008030 ~ 10011025 (-)
G188446 NA non-coding upstream 271826 10068116 ~ 10069710 (-)
G188475 NA non-coding upstream 294093 10090383 ~ 10090726 (-)
ghrh ghrh,LOC103034597,LOC108438619 other downstream 2374971 7409122 ~ 7419806 (-)
G187946 mybl2,mybl2b other downstream 2403751 7388397 ~ 7391026 (-)
pdrg1 pdrg1 other downstream 2601525 7188616 ~ 7193252 (-)
LOC111195363 snrpe other downstream 2811937 6977651 ~ 6982840 (-)
svbp svbp other downstream 4271856 5518793 ~ 5522921 (-)
LOC111195437 NA other upstream 154794 9951084 ~ 9956317 (-)
G188898 NA other upstream 1194527 10990817 ~ 10991394 (-)
G189055 NA other upstream 2247623 12043913 ~ 12044293 (-)
eogt eogt,LOC107729408 other upstream 2364252 12160542 ~ 12178610 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other upstream 2501759 12298049 ~ 12395532 (-)

Expression


Co-expression Network