G188320


Basic Information

Item Value
gene id G188320
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 9841791 ~ 9842018 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU255357
ccgtaaagaagcatcgatgggtagcataactcgacagaacaccggctccccagagcacagctgattcacacagtgtctctcccgctaaccataataaacactgttgggaaaagttcagctgcgctgcctgtggcatttctctcaccaccaagactttcagaaagGTAAACTCAGTTTGTGGACGCAGGTTAAGCACGTAACGTAGCACAGCTCCGTTAACTTGTTAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU255357 True 228 lncRNA 0.49 1 9841791 9842018

Neighbor

gene id symbol gene type direction distance location
LOC111195367 LOC106511942 coding downstream 103294 9736348 ~ 9738497 (-)
LOC103046978 LOC108414459 coding downstream 1515515 8287918 ~ 8326276 (-)
LOC103022868 rap1b,rap1a,rap1ab,LOC105901888,LOC106566052,LOC107560426,LOC107742898 coding downstream 1702262 8121737 ~ 8139529 (-)
LOC103034269 LOC108438618,LOC108414439 coding downstream 2385809 7434144 ~ 7455982 (-)
LOC103035242 NA coding downstream 2463200 7376559 ~ 7378591 (-)
c22h1orf158 LOC103033413 coding upstream 2100 9844118 ~ 9899592 (-)
LOC103033950 NA coding upstream 60942 9902960 ~ 9928421 (-)
LOC103046340 NA coding upstream 133715 9975733 ~ 9996465 (-)
aadacl4 NA coding upstream 157297 9999315 ~ 10021677 (-)
LOC111195372 LOC108410896,LOC108414677,LOC108416243 coding upstream 252305 10094323 ~ 10102893 (-)
G188317 NA non-coding downstream 11614 9829787 ~ 9830177 (-)
G188307 NA non-coding downstream 45501 9794777 ~ 9796290 (-)
G188225 NA non-coding downstream 651998 9189578 ~ 9189793 (-)
G188224 NA non-coding downstream 656680 9184911 ~ 9185111 (-)
G188223 NA non-coding downstream 668131 9173389 ~ 9173660 (-)
LOC111195369 NA non-coding upstream 166012 10008030 ~ 10011025 (-)
G188446 NA non-coding upstream 226098 10068116 ~ 10069710 (-)
G188475 NA non-coding upstream 248365 10090383 ~ 10090726 (-)
G188557 NA non-coding upstream 273944 10115962 ~ 10116742 (-)
G188603 NA non-coding upstream 386025 10228043 ~ 10229142 (-)
ghrh ghrh,LOC103034597,LOC108438619 other downstream 2421985 7409122 ~ 7419806 (-)
G187946 mybl2,mybl2b other downstream 2450765 7388397 ~ 7391026 (-)
pdrg1 pdrg1 other downstream 2648539 7188616 ~ 7193252 (-)
LOC111195363 snrpe other downstream 2858951 6977651 ~ 6982840 (-)
svbp svbp other downstream 4318870 5518793 ~ 5522921 (-)
LOC111195437 NA other upstream 109066 9951084 ~ 9956317 (-)
G188898 NA other upstream 1148799 10990817 ~ 10991394 (-)
G189055 NA other upstream 2201895 12043913 ~ 12044293 (-)
eogt eogt,LOC107729408 other upstream 2318524 12160542 ~ 12178610 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other upstream 2456031 12298049 ~ 12395532 (-)

Expression


Co-expression Network