LOC103046978 (LOC108414459)


Basic Information

Item Value
gene id LOC103046978
gene name LOC108414459
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 8287918 ~ 8326276 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228497.3
TAGTAAACTAGTGGACTCCACTGGTCCTGCAGGGAACAAGTGAGCCTGTAACTCACACTCACTTCATCACTAGCACTTTCAGTCCACTCAGAGGAACAAAAGAGGAACTTATTGGCCATTTTGAAGGATCTAGAAACATAGAAGCTAGTGATACAATATTGGATTGTTGACACTTCTGTTATGGATATTTTGTCTTAGTTTTTGTCCTGGACCTGATAAGATGGCCAGTTTACCCCTCTCCCCTCTGAACGACTGGTGGGAACCGGGCTGTGCCAGCCTCCATCCCCTGGTATGCCACCTGTGCCATGAACAGTATCGCCAGCCGTGTCTTCTGGACTGCTACCACATCTTCTGTGCCAGCTGCTTGCACGGCCAGGCCAGGGGGAACCGTCTCATCTGCCCCCTCTGTGGATATCCCTCGGTTGTAAGGGGGATGAATTCACTCCTTCCTGAAGACCGCTTACTGAAGTTCCTTGTGGATAACTCCCCTGACAGTGTGGTGCAGTGTTCTAACTGTGATCTGGAAAGCAGAGCACAGGATGCTGGGCAAATGTATTACTGTAATACCTGTAGCCAGCCACTGTGTGGGCCCTGCAGAGATGTAACACATAAAGCAAAGATGTTCTCCTGCCACGAAATCGTCTCACTGGCCAAGCGTTCCAAAGATGGCCACAGGACGTGTCCTCTTCATCAGGAGCTTTACATCCTGTTCTCCACAGAGAAGAAATACATGCTGTGCATTAAATGCTTTAGAGAAATGCCAGTGGAAAGTCGCATGCACTGCATAGATATCGAGACAGCATATGCTCAAGGTTGTGAGATACTGGACCAGGCCGTGCTGGCGGTGAAGGAGCTGCAGACGTCTGCACGTGAGGCCATCATGCTGCTGAAGGTCATGCTGGTAGAAGTGCGCACCAATGTTGAAGAGGAGGAGAATGCAATCTGCAACCTGTTCAACAGACTGCAGGAGAAGCTTATAGAGAGGAAGAGGATTCTGCTGAAAGCTGCTGAGAGTCAACGTGAAGAGAAGGTGAAGACCCTGAAGGAACAACATTATCACTTGGCTGCTCTTCTGCCCACACTTCAGGTTCACCTGGTCAGATGTTCAGCATTTCTCAGTTCAGCCAACAAGTATGAATTCCTGGATATGGGCTATCAACTCATGAAGAGGTTCTACAAAATCCTAAAGCTGCCCCATCAACTTCTTCCTGAGCAGAGCAGCAAAATTAACACAGATTTTCATGCTGAGTTTGCTCGCTGCCTGGAGCCCTTGCTGCTGCTGGGTCAGCGCAGACCCTGCCCAGTCTCTGGAGGAGTGGCTGTTGGCAATCTGGTGGCATCTGTGCAGTCCATGTCGTGTCGTTCCCCCTCTCTCAGTGACATGCCTCAGGTCCCCTGTCTAGGGCACAGACCCACCTTTCACCGCTACATCTGCACCAAGGTGCTGCTGGCTGAGGGAGGAGATACACCCTTCACCGAGCACTGCCGCAACTATGAGAACTGCTACAGGACTCTTCAGATTGAAATCCAGCATCTGAAGGATCAGGTGCAGGAGATGCACAGAGACCTCACCAAGCACCACTCGCTCATCAACACAGACACCATGGAGGAGATTATGGAGAGATCTCTGCACATAGACCAGCAGATCACATCCCAGCACTCCTCTGTACAGACGCTCAGGGCCATATTTGAGGAGATTTGGGAGGAGACCTTTCAAAGAGTCACAAATGAGCAGGAGATCTATGAAGCACAGCTTCATGATCTTCTTCAGCTGAAGCAAGAGAACTCCTATTTGATGACTATCGCACGGCAGATAGGGCCGTACATCTCATCCATCGCAAAAGTGAAGGAACGTCTTGAGCCCAGGTTCCAGGAACCAAAGGAACTTGAGGACGATCGAACAGAGATCATGCTGAAGATTTATGAGGACACTACAATAACTGGAGAATCACAGCACAGCAATGGCGAGAGCATCTACAGCTGGGATTCAGACACAAATAAGAGTGGTCTAATGTTACAACTGGATGAGGGGTTTCCGCCAAAGAACTCCAGAGACTACCACAGCCGAAATCAGCAGAGGAGTATCACTATAACTTCATCATGAATCTGAGAGGAAAAATGCAACAACCGGCAAGTGGACAGTTATAATACAGCTGAAGAATTTCTGCAGGGATCACTACTCCTACTGTAGTGAACTTTATGAGCAAATGGACACGATTATGTTATATTCATGAGCTGCTGTGGAATGGAAAAGAAGGACAACCTGAGTGAGGCTACATGAAAACTTACATAAAATCATTATATATGTTGTAAAAAATAGTATAAATTTTCACCTATATCTACctatatattgtaattatttgaAGCCCAGTATTTTAATGCCTACAATAATGCTGTATTTGACTATGTTCTTGCACAGGAGCATCTCagagataatatatatatatatta
>XM_007228498.3
TAGTAAACTAGTGGACTCCACTGGTCCTGCAGGGAACAAGTGAGCCTGTAACTCACACTCACTTCATCACTAGCACTTTCAGTCCACTCAGAGGAACAAAAGAGGAACTTATTGGCCATTTTGAAGGATCTAGAAACATAGAAGCTAGTGATACAATATTGGATTGTTGACACTTCTGTTATGGATATTTTGTCTTAGTTTTTGTCCTGGACCTGATAAGATGGCCAGTTTACCCCTCTCCCCTCTGAACGACTGGTGGGAACCGGGCTGTGCCAGCCTCCATCCCCTGGTATGCCACCTGTGCCATGAACAGTATCGCCAGCCGTGTCTTCTGGACTGCTACCACATCTTCTGTGCCAGCTGCTTGCACGGCCAGGCCAGGGGGAACCGTCTCATCTGCCCCCTCTGTGGATATCCCTCGGTTGTAAGGGGGATGAATTCACTCCTTCCTGAAGACCGCTTACTGAAGTTCCTTGTGGATAACTCCCCTGACAGTGTGGTGCAGTGTTCTAACTGTGATCTGGAAAGCAGAGCACAGGATGCTGGGCAAATGTATTACTGTAATACCTGTAGCCAGCCACTGTGTGGGCCCTGCAGAGATGTAACACATAAAGCAAAGATGTTCTCCTGCCACGAAATCGTCTCACTGGCCAAGCGTTCCAAAGATGGCCACAGGACGTGTCCTCTTCATCAGGAGCTTTACATCCTGTTCTCCACAGAGAAGAAATACATGCTGTGCATTAAATGCTTTAGAGAAATGCCAGTGGAAAGTCGCATGCACTGCATAGATATCGAGACAGCATATGCTCAAGGTTGTGAGATACTGGACCAGGCCGTGCTGGCGGTGAAGGAGCTGCAGACGTCTGCACGTGAGGCCATCATGCTGCTGAAGGTCATGCTGGTAGAAGTGCGCACCAATGTTGAAGAGGAGGAGAATGCAATCTGCAACCTGTTCAACAGACTGCAGGAGAAGCTTATAGAGAGGAAGAGGATTCTGCTGAAAGCTGCTGAGAGTCAACGTGAAGAGAAGGTGAAGACCCTGAAGGAACAACATTATCACTTGGCTGCTCTTCTGCCCACACTTCAGGTTCACCTGGTCAGATGTTCAGCATTTCTCAGTTCAGCCAACAAGTATGAATTCCTGGATATGGGCTATAGGTTCTACAAAATCCTAAAGCTGCCCCATCAACTTCTTCCTGAGCAGAGCAGCAAAATTAACACAGATTTTCATGCTGAGTTTGCTCGCTGCCTGGAGCCCTTGCTGCTGCTGGGTCAGCGCAGACCCTGCCCAGTCTCTGGAGGAGTGGCTGTTGGCAATCTGGTGGCATCTGTGCAGTCCATGTCGTGTCGTTCCCCCTCTCTCAGTGACATGCCTCAGGTCCCCTGTCTAGGGCACAGACCCACCTTTCACCGCTACATCTGCACCAAGGTGCTGCTGGCTGAGGGAGGAGATACACCCTTCACCGAGCACTGCCGCAACTATGAGAACTGCTACAGGACTCTTCAGATTGAAATCCAGCATCTGAAGGATCAGGTGCAGGAGATGCACAGAGACCTCACCAAGCACCACTCGCTCATCAACACAGACACCATGGAGGAGATTATGGAGAGATCTCTGCACATAGACCAGCAGATCACATCCCAGCACTCCTCTGTACAGACGCTCAGGGCCATATTTGAGGAGATTTGGGAGGAGACCTTTCAAAGAGTCACAAATGAGCAGGAGATCTATGAAGCACAGCTTCATGATCTTCTTCAGCTGAAGCAAGAGAACTCCTATTTGATGACTATCGCACGGCAGATAGGGCCGTACATCTCATCCATCGCAAAAGTGAAGGAACGTCTTGAGCCCAGGTTCCAGGAACCAAAGGAACTTGAGGACGATCGAACAGAGATCATGCTGAAGATTTATGAGGACACTACAATAACTGGAGAATCACAGCACAGCAATGGCGAGAGCATCTACAGCTGGGATTCAGACACAAATAAGAGTGGTCTAATGTTACAACTGGATGAGGGGTTTCCGCCAAAGAACTCCAGAGACTACCACAGCCGAAATCAGCAGAGGAGTATCACTATAACTTCATCATGAATCTGAGAGGAAAAATGCAACAACCGGCAAGTGGACAGTTATAATACAGCTGAAGAATTTCTGCAGGGATCACTACTCCTACTGTAGTGAACTTTATGAGCAAATGGACACGATTATGTTATATTCATGAGCTGCTGTGGAATGGAAAAGAAGGACAACCTGAGTGAGGCTACATGAAAACTTACATAAAATCATTATATATGTTGTAAAAAATAGTATAAATTTTCACCTATATCTACctatatattgtaattatttgaAGCCCAGTATTTTAATGCCTACAATAATGCTGTATTTGACTATGTTCTTGCACAGGAGCATCTCagagataatatatatatatatta

Function

NR:

description
PREDICTED: RING finger protein 207-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228497.3 True 2451 mRNA 0.47 18 8287918 8326276
XM_007228498.3 False 2439 mRNA 0.47 18 8287918 8326276

Neighbor

gene id symbol gene type direction distance location
LOC103022868 rap1b,rap1a,rap1ab,LOC105901888,LOC106566052,LOC107560426,LOC107742898 coding downstream 148389 8121737 ~ 8139529 (-)
LOC103034269 LOC108438618,LOC108414439 coding downstream 831936 7434144 ~ 7455982 (-)
LOC103035242 NA coding downstream 909327 7376559 ~ 7378591 (-)
LOC103036072 phactr3,LOC108254891 coding downstream 944697 7229473 ~ 7343221 (-)
LOC103037403 NA coding downstream 1082527 7197200 ~ 7205391 (-)
LOC111195367 LOC106511942 coding upstream 1410072 9736348 ~ 9738497 (-)
c22h1orf158 LOC103033413 coding upstream 1517842 9844118 ~ 9899592 (-)
LOC103033950 NA coding upstream 1576684 9902960 ~ 9928421 (-)
LOC103046340 NA coding upstream 1649457 9975733 ~ 9996465 (-)
aadacl4 NA coding upstream 1673039 9999315 ~ 10021677 (-)
G188098 NA non-coding downstream 48314 8237728 ~ 8239604 (-)
G188066 NA non-coding downstream 196231 8091432 ~ 8091687 (-)
G188055 NA non-coding downstream 237822 8049256 ~ 8050096 (-)
G188042 NA non-coding downstream 396566 7881289 ~ 7891352 (-)
G188030 NA non-coding downstream 541418 7740225 ~ 7746500 (-)
G188118 LOC103047485,LOC108414460 non-coding upstream 5909 8332185 ~ 8347336 (-)
G188123 NA non-coding upstream 13487 8339763 ~ 8342249 (-)
G188165 NA non-coding upstream 155045 8481321 ~ 8500934 (-)
G188171 NA non-coding upstream 343747 8670023 ~ 8670397 (-)
G188179 NA non-coding upstream 444182 8770458 ~ 8771485 (-)
ghrh ghrh,LOC103034597,LOC108438619 other downstream 868112 7409122 ~ 7419806 (-)
G187946 mybl2,mybl2b other downstream 896892 7388397 ~ 7391026 (-)
pdrg1 pdrg1 other downstream 1094666 7188616 ~ 7193252 (-)
LOC111195363 snrpe other downstream 1305078 6977651 ~ 6982840 (-)
svbp svbp other downstream 2764997 5518793 ~ 5522921 (-)
LOC111195437 NA other upstream 1624808 9951084 ~ 9956317 (-)
G188898 NA other upstream 2664541 10990817 ~ 10991394 (-)
G189055 NA other upstream 3717637 12043913 ~ 12044293 (-)
eogt eogt,LOC107729408 other upstream 3834266 12160542 ~ 12178610 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other upstream 3971773 12298049 ~ 12395532 (-)

Expression


Co-expression Network