LOC103035242


Basic Information

Item Value
gene id LOC103035242
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 7376559 ~ 7378591 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251378.3
tgagtgaggcCTAATCTGCACAGGGATGGAGGAAGAGAGGGacGGTGTGAAGACCTTTGAGGGCCTGTCTTTGTCAGGGTTGGACAGGGGCTTTGTCACAGATGGCAGTCTTTCTGCTTTGTCCATTCAGATGGATCCCTTCAAGCCacccaaggagattgttgtagAATATTCAGAGGCCGCTCCTGCTCTACCAgcttcttttgatcactcctcTAATGTTTTGTCACCTTTAAATGTCCCCAGCAAGAGCTCTCTACTGTCTCCAAGCACCACCTTGACTGCTGGCCTGAATAATCTGGTAGCAGGCAAGTCCTCCACGCCTTACGAAAGGGTTAAATTCCTAAAGCCCATCCTGGTCAGCTCGCTGGACCTGTCCTGCATTGATCTGACCACCTCCCACCCTTTATGGGAAGTCTCTCAAATCAGGCCTTCTGTGGAAAGCCCAAAGTTGTGCCTGGACTCCAGCAAGTTTGAGTCAACATGGAGCCCCAGTTATCAATCAGTTCCTCAAACGCTGGCAGAGATTTCCTCGCTGATCTGTTCGGGGACTCCACCAGGCAAATCTGCCACGGAGGAGTATCTGAGGTCTACCTTCCAGGATTCCAATCTGCGCCATGCTGTTTTGGAGCTTGCAGAGGAACAGCAGAAAGGTCTGGCCAAAAACTTGGCTATCTAATTGTGTACTGATGTTGTAATGTTTTCTTTTAGGGGCACTATTGGAAACGATTAGCTATTAGCTGCCTGCTTGAAACTGTATTTAATGGCTGTATTACAACTGTatgtaatgtgtatttttgtaccttaaaataaactgtggtattaatgcatttaattaaattgttatt
>XM_015606372.2
AGCTCTTGTAACTCAAGAGTAGCACAATAAACAGTAATCTGGCTATATTAACTGGCTAGTATCCTTTCTGTTGGAGCAAGGATCTgacGGTGTGAAGACCTTTGAGGGCCTGTCTTTGTCAGGGTTGGACAGGGGCTTTGTCACAGATGGCAGTCTTTCTGCTTTGTCCATTCAGATGGATCCCTTCAAGCCacccaaggagattgttgtagAATATTCAGAGGCCGCTCCTGCTCTACCAgcttcttttgatcactcctcTAATGTTTTGTCACCTTTAAATGTCCCCAGCAAGAGCTCTCTACTGTCTCCAAGCACCACCTTGACTGCTGGCCTGAATAATCTGGTAGCAGGCAAGTCCTCCACGCCTTACGAAAGGGTTAAATTCCTAAAGCCCATCCTGGTCAGCTCGCTGGACCTGTCCTGCATTGATCTGACCACCTCCCACCCTTTATGGGAAGTCTCTCAAATCAGGCCTTCTGTGGAAAGCCCAAAGTTGTGCCTGGACTCCAGCAAGTTTGAGTCAACATGGAGCCCCAGTTATCAATCAGTTCCTCAAACGCTGGCAGAGATTTCCTCGCTGATCTGTTCGGGGACTCCACCAGGCAAATCTGCCACGGAGGAGTATCTGAGGTCTACCTTCCAGGATTCCAATCTGCGCCATGCTGTTTTGGAGCTTGCAGAGGAACAGCAGAAAGGTCTGGCCAAAAACTTGGCTATCTAATTGTGTACTGATGTTGTAATGTTTTCTTTTAGGGGCACTATTGGAAACGATTAGCTATTAGCTGCCTGCTTGAAACTGTATTTAATGGCTGTATTACAACTGTatgtaatgtgtatttttgtaccttaaaataaactgtggtattaatgcatttaattaaattgttatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251378.3 False 848 mRNA 0.47 2 7376559 7378591
XM_015606372.2 True 893 mRNA 0.45 2 7376559 7378477

Neighbor

gene id symbol gene type direction distance location
LOC103036072 phactr3,LOC108254891 coding downstream 33338 7229473 ~ 7343221 (-)
LOC103037403 NA coding downstream 171168 7197200 ~ 7205391 (-)
hp1bp3 hp1bp3 coding downstream 310473 7053226 ~ 7066086 (-)
sh2d5 sh2d5 coding downstream 326258 7033104 ~ 7050301 (-)
kif17 kif17,LOC108438632 coding downstream 345532 7007447 ~ 7031027 (-)
LOC103034269 LOC108438618,LOC108414439 coding upstream 55553 7434144 ~ 7455982 (-)
LOC103022868 rap1b,rap1a,rap1ab,LOC105901888,LOC106566052,LOC107560426,LOC107742898 coding upstream 743146 8121737 ~ 8139529 (-)
LOC103046978 LOC108414459 coding upstream 909327 8287918 ~ 8326276 (-)
LOC111195367 LOC106511942 coding upstream 2357757 9736348 ~ 9738497 (-)
c22h1orf158 LOC103033413 coding upstream 2465527 9844118 ~ 9899592 (-)
G187931 srsf6,LOC107654800,LOC107722005,LOC103156038,LOC108254894 non-coding downstream 15345 7354247 ~ 7361214 (-)
G187933 acot8,LOC107730625,LOC107670930 non-coding downstream 23256 7350011 ~ 7353303 (-)
G187928 NA non-coding downstream 144715 7231122 ~ 7231844 (-)
G187881 NA non-coding downstream 188107 7188078 ~ 7188452 (-)
G187880 NA non-coding downstream 188521 7187790 ~ 7188038 (-)
G187965 NA non-coding upstream 79187 7457778 ~ 7460141 (-)
G187968 NA non-coding upstream 87131 7465722 ~ 7465984 (-)
G187969 NA non-coding upstream 88502 7467093 ~ 7467324 (-)
G188016 NA non-coding upstream 312062 7690653 ~ 7691321 (-)
G188030 NA non-coding upstream 361634 7740225 ~ 7746500 (-)
pdrg1 pdrg1 other downstream 183307 7188616 ~ 7193252 (-)
LOC111195363 snrpe other downstream 393719 6977651 ~ 6982840 (-)
svbp svbp other downstream 1853638 5518793 ~ 5522921 (-)
phf13 phf13 other downstream 1870812 5493412 ~ 5505747 (-)
vamp3 vamp3,LOC107582408,LOC107751179 other downstream 2387301 4974228 ~ 4989258 (-)
G187946 mybl2,mybl2b other upstream 9806 7388397 ~ 7391026 (-)
ghrh ghrh,LOC103034597,LOC108438619 other upstream 30531 7409122 ~ 7419806 (-)
LOC111195437 NA other upstream 2572493 9951084 ~ 9956317 (-)
G188898 NA other upstream 3612226 10990817 ~ 10991394 (-)
G189055 NA other upstream 4665322 12043913 ~ 12044293 (-)

Expression


Co-expression Network