G187880


Basic Information

Item Value
gene id G187880
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 7187790 ~ 7188038 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU254802
tttttttgcttcatgtAAGTATCTTATGCATTTCTGATAAGTTAACTGTCTGCATCAGGCACCAACAGCTGTCTCTCtgtcatctatctatctgtcatCTAAAGTTTCGACACCCCTCCTTCAATGTGCtctcttttttatgatttttattgtaaatttaatattaaagacattaaagcagTAAAGGAAAACATGCAGGATTacagaaagtgttaaacaaaccagaacatgttttatacttaAGATTCT

Function

GO:

id name namespace
GO:0005179 hormone activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254802 True 249 lncRNA 0.32 1 7187790 7188038

Neighbor

gene id symbol gene type direction distance location
hp1bp3 hp1bp3 coding downstream 121704 7053226 ~ 7066086 (-)
sh2d5 sh2d5 coding downstream 137489 7033104 ~ 7050301 (-)
kif17 kif17,LOC108438632 coding downstream 156763 7007447 ~ 7031027 (-)
sox13 sox13 coding downstream 238836 6897991 ~ 6948954 (-)
LOC103022878 NA coding downstream 359079 6812408 ~ 6828711 (-)
LOC103037403 NA coding upstream 9162 7197200 ~ 7205391 (-)
LOC103036072 phactr3,LOC108254891 coding upstream 41435 7229473 ~ 7343221 (-)
LOC103035242 NA coding upstream 188521 7376559 ~ 7378591 (-)
LOC103034269 LOC108438618,LOC108414439 coding upstream 246106 7434144 ~ 7455982 (-)
LOC103022868 rap1b,rap1a,rap1ab,LOC105901888,LOC106566052,LOC107560426,LOC107742898 coding upstream 933699 8121737 ~ 8139529 (-)
G187878 NA non-coding downstream 3737 7183826 ~ 7184053 (-)
G187875 NA non-coding downstream 32441 7153083 ~ 7155349 (-)
LOC111195364 NA non-coding downstream 57011 7106200 ~ 7130779 (-)
G187794 NA non-coding downstream 189931 6990964 ~ 6997859 (-)
G187787 NA non-coding downstream 301693 6885187 ~ 6886097 (-)
G187881 NA non-coding upstream 40 7188078 ~ 7188452 (-)
G187928 NA non-coding upstream 43084 7231122 ~ 7231844 (-)
G187933 acot8,LOC107730625,LOC107670930 non-coding upstream 161973 7350011 ~ 7353303 (-)
G187931 srsf6,LOC107654800,LOC107722005,LOC103156038,LOC108254894 non-coding upstream 166209 7354247 ~ 7361214 (-)
G187965 NA non-coding upstream 269740 7457778 ~ 7460141 (-)
LOC111195363 snrpe other downstream 204950 6977651 ~ 6982840 (-)
svbp svbp other downstream 1664869 5518793 ~ 5522921 (-)
phf13 phf13 other downstream 1682043 5493412 ~ 5505747 (-)
vamp3 vamp3,LOC107582408,LOC107751179 other downstream 2198532 4974228 ~ 4989258 (-)
LOC103030666 kcnab2a,LOC108431628,LOC107712982,LOC107657983,LOC107582417,LOC107592856,LOC108255041,LOC103385628,LOC101463812,LOC108231619,LOC107385277,LOC106513833,LOC100709904 other downstream 3026836 3970934 ~ 4160954 (-)
pdrg1 pdrg1 other upstream 578 7188616 ~ 7193252 (-)
G187946 mybl2,mybl2b other upstream 200359 7388397 ~ 7391026 (-)
ghrh ghrh,LOC103034597,LOC108438619 other upstream 221084 7409122 ~ 7419806 (-)
LOC111195437 NA other upstream 2763046 9951084 ~ 9956317 (-)
G188898 NA other upstream 3802779 10990817 ~ 10991394 (-)

Expression


Co-expression Network