LOC103022878


Basic Information

Item Value
gene id LOC103022878
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 6812408 ~ 6828711 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682309.1
AAACGAGAGCTGGATCCAGTGCCATGTGTTAGTCTATGCTTTACACATTTACTGATAGGTAGAGTCCAGGTAGAAAATGTAGAGTTTAAACTCGGCTATAATTAGGTTTTGACTTTGCAAGTGGtaattatttactgttataGATTGTAGAGTGTTATTTTTGGATTATATTTAGAAGCTTTATGAAGTTGATGGATATTTATGGCGtgtgggctgttttttttttcttttatttgctgAATCTTTAGTTTAGTTCGTAGTTAGTTAATTTAGTTCACCGCTAATGCTCGCCCCTATCCGGCCAGCCCGGGCCAGCGAGTGGCTCCGTAGCGCCCTGGCCGAGCACTTCAGCCCGGACCCCGGCGTGCGCAACGAGGTGGTGGTGCTGGCGCTGGGTGTGGACCAGTACCTGCAGGAGGTGTTCCACCACCTAGCGCTGTGCTGCGGTGGCGGTAGCGGGGATGGGGAGCTGCTGTCCGGCGGGGACTTTAGACTGCTGTGCGGGTGTCTGAGCCTGCGGGAGGAGGAGGTCTGCGCGGGGCTGCCCGCGGCGCTCACCTTCAGGGACTTCCACTCGCGCCTCTGCGGGGTTTTCGCAGCCCGAGCCGGGCCGCCCGGCCTCCGCCTGCCCGTGACGGAGGAGACGGAGCTCGTGGAGCGGGAGATCCGCCGGCGGTGTCCCAGAGTCCGGAGGAGGAGGCGGGTGAGCTTCGACCTGAGTCAGGACCGAGCACAGAGCCGCCGACGAGCCTCAAAACACGAGTCCAGCAGAGAAACAGAGCTGGAGATGCAGCACAAACCATGGCAAGAGCAGGTAGAGATGGAGAACGCCAGTCTGCGGGAGCTGGTGGAGGACCTACGCTCGGCTCTCCAGAGCAGTGATGCCCGCTGCATGGCCCTCGAAGTGGCTCTGCGAAGGGAACGCCTGGCAACGTCCTGCAGACTCTGTTCTACAGAGGGCGCCACTGAAAGACAGAATATCCCTGCCGGAGATGACCCCAGAGTAAAACATCCCAAGAGTGCCGGACGGGACAGCCGGAGGCGCACCAAGGACCTGCTGCGGGAACTGGAGTTGATTCGTGCTTCGCGGGATGGACAGCTGCAGGAGGCGATGAGGTTCAACCAGCGTCTAGAGGAGGAGCTGGCGGTGGCCTACGGAGAGGTCAGTAGGCTAGAGGAGACATTAGGCAACATGAGGAGAGAGAGCGCTGAGATCAAGAAGAGAGCAGAGGAAGCAAGAACTGCTCTGGCTGCGGGACTGAAAAGAGTCAGGGATATCCAGGACCTGGCGCAGCAGGTGGCTCCACTGCAGGAGAAGGTGCAGAACCTCGAGACAGAGCTGGACAGGTTCAGATCCCAGTGCACCTGCAGGGCTTCGTGTGAGCAGAGCCCGGATGCTCCGGTCGATTCTGCTCCTCGGATCCTCCCTACGGGCCGAGACGAGACTTTAATCAGAGGAGAAGAAGGCCTGCAGAGGGCAGTCGAGGGCCGTGCAGCGtctgatgaggaggaggaggagaggagtgcGGAGGATGGGCAGTGCTGTCTGCTGGAGGTGAAGCGGCTGATCAACAGGCTTCATAACTGCTCCAAGGGGTGTCAGAGGACAGCTGTGTGTCACCTGCTTCTGTCCCAGAACTCGACTGGATGTTACGGCGAGCCGTGCGGCTGCTCAGGGTCATGGGAGGGGAAGACGAGGGGCAGACGGCACTACGCTCTCCCAGACGAGAGAGAACTGGATACGgacCTGCAGCTGAAGCCGGAGGAGGTGGACAGATGGACGGTGCAGACGGAACGAGTGCGTCTGTCCTTGCTGGAGGAGAAACAAACTGACACACTGTCCCTCCTGCTGAAGTTACGGGAAAAAAAAGTCTCGAGGAGAGTCCTGGGTAGAATTCTTTTGGACACATTGGATCTGTGCAACAGAAAAGGCCAAGATCCCACCCCTGTTTTTCAGGTGGTGAACACTCTCTGTGAGCAGCTGGTCTCCAATGAGCTCCTGTATGGGGAAGAAGAGGTCACACTGGGGTCTCAGCCCAGAGTGACCCCAGGTCATCGAAACGCCAATAACCCCCTTCTCATCTCCtgctgagagagagactttTCCCTTTTAACTACATTCAGGCTCCAGACTTTAAATAGGGTCCTGCACAGACCACCCATGGGTCACGGGTAGTGAGGAGAGCTGCTGCTAGTTTATACAGTTtccaatccatgtgtgaaaatgatgatctcgtGCTCcatgaatcactctttcacaattccagccccatgaatcctgacactgtcatcttggaatatgcttgtGCCATCAGgcaagaaaaaatccattgatggaataacctggtctatctTCAGCATATTCAggtggtcagctgacctcattctttcagcacatactgttgctgaacctaaacctgaccaactgacCAGGCCAGACCAACTTTGCCGGTTTGTCTCACTGATAAGTGCATTTCTTAAGGCCACACAGCTGTTTAATCCCAATCTCTTGAGTTCCCTTCACATTGTGCAtatggaaatgctcttactttgactattaaacatatccctgagttcta
>XM_022682310.1
CTAAACGAGAGCTGGATCCAGTGCCATGTGTTAGTCTATGCTTTACACATTTACTGATAGGTAGAGTCCAGGTAGAAAATGTAGAGTTTAAACTCGGCTATAATTAGGTTTTGACTTTGCAAGTGGtaattatttactgttataGATTGTAGAGTGTTATTTTTGGATTATATTTAGAAGCTTTATGAAGTTGATGGATATTTATGGCGtgtgggctgttttttttttcttttatttgctgAATCTTTAGTTTAGTTCGTAGTTAGTTAATTTAGTTCACCGCTAATGCTCGCCCCTATCCGGCCAGCCCGGGCCAGCGAGTGGCTCCGTAGCGCCCTGGCCGAGCACTTCAGCCCGGACCCCGGCGTGCGCAACGAGGTGGTGGTGCTGGCGCTGGGTGTGGACCAGTACCTGCAGGAGGTGTTCCACCACCTAGCGCTGTGCTGCGGTGGCGGTAGCGGGGATGGGGAGCTGCTGTCCGGCGGGGACTTTAGACTGCTGTGCGGGTGTCTGAGCCTGCGGGAGGAGGAGGTCTGCGCGGGGCTGCCCGCGGCGCTCACCTTCAGGGACTTCCACTCGCGCCTCTGCGGGGTTTTCGCAGCCCGAGCCGGGCCGCCCGGCCTCCGCCTGCCCGTGACGGAGGAGACGGAGCTCGTGGAGCGGGAGATCCGCCGGCGGTGTCCCAGAGTCCGGAGGAGGAGGCGGGTGAGCTTCGACCTGAGTCAGGACCGAGCACAGAGCCGCCGACGAGCCTCAAAACACGAGTCCAGCAGAGAAACAGAGCTGGAGATGCAGCACAAACCATGGCAAGAGCAGGTAGAGATGGAGAACGCCAGTCTGCGGGAGCTGGTGGAGGACCTACGCTCGGCTCTCCAGAGCAGTGATGCCCGCTGCATGGCCCTCGAAGTGGCTCTGCGAAGGGAACGCCTGGCAACGTCCTGCAGACTCTGTTCTACAGAGGGCGCCACTGAAAGACAGAATATCCCTGCCGGAGATGACCCCAGAGTAAAACATCCCAAGAGTGCCGGACGGGACAGCCGGAGGCGCACCAAGGACCTGCTGCGGGAACTGGAGTTGATTCGTGCTTCGCGGGATGGACAGCTGCAGGAGGCGATGAGGTTCAACCAGCGTCTAGAGGAGGAGCTGGCGGTGGCCTACGGAGAGGTCAGTAGGCTAGAGGAGACATTAGGCAACATGAGGAGAGAGAGCGCTGAGATCAAGAAGAGAGCAGAGGAAGCAAGAACTGCTCTGGCTGCGGGACTGAAAAGAGTCAGGGATATCCAGGACCTGGCGCAGCAGGTGGCTCCACTGCAGGAGAAGGTGCAGAACCTCGAGACAGAGCTGGACAGGTTCAGATCCCAGTGCACCTGCAGGGCTTCGTGTGAGCAGAGCCCGGATGCTCCGGTCGATTCTGCTCCTCGGATCCTCCCTACGGGCCGAGACGAGACTTTAATCAGAGGAGAAGGCCTGCAGAGGGCAGTCGAGGGCCGTGCAGCGtctgatgaggaggaggaggagaggagtgcGGAGGATGGGCAGTGCTGTCTGCTGGAGGTGAAGCGGCTGATCAACAGGCTTCATAACTGCTCCAAGGGGTGTCAGAGGACAGCTGTGTGTCACCTGCTTCTGTCCCAGAACTCGACTGGATGTTACGGCGAGCCGTGCGGCTGCTCAGGGTCATGGGAGGGGAAGACGAGGGGCAGACGGCACTACGCTCTCCCAGACGAGAGAGAACTGGATACGgacCTGCAGCTGAAGCCGGAGGAGGTGGACAGATGGACGGTGCAGACGGAACGAGTGCGTCTGTCCTTGCTGGAGGAGAAACAAACTGACACACTGTCCCTCCTGCTGAAGTTACGGGAAAAAAAAGTCTCGAGGAGAGTCCTGGGTAGAATTCTTTTGGACACATTGGATCTGTGCAACAGAAAAGGCCAAGATCCCACCCCTGTTTTTCAGGTGGTGAACACTCTCTGTGAGCAGCTGGTCTCCAATGAGCTCCTGTATGGGGAAGAAGAGGTCACACTGGGGTCTCAGCCCAGAGTGACCCCAGGTCATCGAAACGCCAATAACCCCCTTCTCATCTCCtgctgagagagagactttTCCCTTTTAACTACATTCAGGCTCCAGACTTTAAATAGGGTCCTGCACAGACCACCCATGGGTCACGGGTAGTGAGGAGAGCTGCTGCTAGTTTATACAGTTtccaatccatgtgtgaaaatgatgatctcgtGCTCcatgaatcactctttcacaattccagccccatgaatcctgacactgtcatcttggaatatgcttgtGCCATCAGgcaagaaaaaatccattgatggaataacctggtctatctTCAGCATATTCAggtggtcagctgacctcattctttcagcacatactgttgctgaacctaaacctgaccaactgacCAGGCCAGACCAACTTTGCCGGTTTGTCTCACTGATAAGTGCATTTCTTAAGGCCACACAGCTGTTTAATCCCAATCTCTTGAGTTCCCTTCACATTGTGCAtatggaaatgctcttactttgactattaaacatatccctgagttcta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682309.1 True 2579 mRNA 0.55 8 6812408 6828709
XM_022682310.1 False 2578 mRNA 0.55 8 6812408 6828711

Neighbor

gene id symbol gene type direction distance location
cdk18 cdk18,si:dkey-166c18.1,LOC108254840,LOC107654374,LOC107756627,LOC107698687 coding downstream 310012 6395390 ~ 6502396 (-)
LOC103042703 LOC103042703,LOC108437606 coding downstream 433644 6339628 ~ 6378764 (-)
LOC103023821 epha8,LOC107565732,LOC107756634,LOC107654383,LOC107582396 coding downstream 735694 5917506 ~ 6076714 (-)
c22h1orf50 cunh1orf50,zgc:112255,LOC107654415,LOC107654365,LOC107565729,LOC107582467,LOC107756638,LOC107751182 coding downstream 1036263 5771810 ~ 5776145 (-)
LOC103046070 cdc42,LOC107083933,LOC100697482,LOC107395067,LOC103386293,LOC108435227,LOC103465423,LOC100691174,LOC101164400,LOC108248645 coding downstream 1048896 5746890 ~ 5763512 (-)
sox13 sox13 coding upstream 69280 6897991 ~ 6948954 (-)
kif17 kif17,LOC108438632 coding upstream 178736 7007447 ~ 7031027 (-)
sh2d5 sh2d5 coding upstream 204393 7033104 ~ 7050301 (-)
hp1bp3 hp1bp3 coding upstream 224515 7053226 ~ 7066086 (-)
LOC103037403 NA coding upstream 368489 7197200 ~ 7205391 (-)
G187766 NA non-coding downstream 10960 6775168 ~ 6801448 (-)
G187764 NA non-coding downstream 52506 6759507 ~ 6759902 (-)
G187763 NA non-coding downstream 53806 6758142 ~ 6758602 (-)
G187745 NA non-coding downstream 256531 6555315 ~ 6555877 (-)
G187700 NA non-coding downstream 291759 6520369 ~ 6520649 (-)
G187787 NA non-coding upstream 56476 6885187 ~ 6886097 (-)
G187794 NA non-coding upstream 162253 6990964 ~ 6997859 (-)
LOC111195364 NA non-coding upstream 277489 7106200 ~ 7130779 (-)
G187875 NA non-coding upstream 324372 7153083 ~ 7155349 (-)
G187878 NA non-coding upstream 355115 7183826 ~ 7184053 (-)
svbp svbp other downstream 1289487 5518793 ~ 5522921 (-)
phf13 phf13 other downstream 1306661 5493412 ~ 5505747 (-)
vamp3 vamp3,LOC107582408,LOC107751179 other downstream 1823150 4974228 ~ 4989258 (-)
LOC103030666 kcnab2a,LOC108431628,LOC107712982,LOC107657983,LOC107582417,LOC107592856,LOC108255041,LOC103385628,LOC101463812,LOC108231619,LOC107385277,LOC106513833,LOC100709904 other downstream 2651454 3970934 ~ 4160954 (-)
LOC107197677 NA other downstream 3032688 3778014 ~ 3779720 (-)
LOC111195363 snrpe other upstream 148940 6977651 ~ 6982840 (-)
pdrg1 pdrg1 other upstream 359905 7188616 ~ 7193252 (-)
G187946 mybl2,mybl2b other upstream 559686 7388397 ~ 7391026 (-)
ghrh ghrh,LOC103034597,LOC108438619 other upstream 580411 7409122 ~ 7419806 (-)
LOC111195437 NA other upstream 3122373 9951084 ~ 9956317 (-)

Expression


Co-expression Network