G188603


Basic Information

Item Value
gene id G188603
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 10228043 ~ 10229142 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU255701
aactcatatttaaaacaacacgaccacccgtctcacatttaccaactaacatcaaaaacagcaCGACCacccgtctcacatttaccaactcatatttaaaacaacacGACCACccgtctcacatttaccaactcatatttaaaacaacacgaccacccgtctcacatttaccaactcacatttaaaacaacacgaccacccgtctcacatttaccaactaacatcaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU255701 True 229 lncRNA 0.40 4 10228043 10229142

Neighbor

gene id symbol gene type direction distance location
LOC111195372 LOC108410896,LOC108414677,LOC108416243 coding downstream 125150 10094323 ~ 10102893 (-)
aadacl4 NA coding downstream 206366 9999315 ~ 10021677 (-)
LOC103046340 NA coding downstream 231578 9975733 ~ 9996465 (-)
LOC103033950 NA coding downstream 299622 9902960 ~ 9928421 (-)
c22h1orf158 LOC103033413 coding downstream 328451 9844118 ~ 9899592 (-)
LOC111195430 gria2,LOC108411138 coding upstream 604874 10834016 ~ 10859898 (-)
lrig1 lrig1,LOC107716980,LOC107557776 coding upstream 850981 11080123 ~ 11155745 (-)
suclg2 suclg2,LOC107729402,LOC107753779,LOC107699794 coding upstream 1143115 11372257 ~ 11534415 (-)
fam19a4 fam19a4,fam19a4b,LOC107655986,LOC107600333,LOC107729393,LOC107696804,LOC107558879 coding upstream 1828390 12057532 ~ 12115859 (-)
tmf1 tmf1 coding upstream 1952977 12182119 ~ 12207582 (-)
G188557 NA non-coding downstream 111301 10115962 ~ 10116742 (-)
G188475 NA non-coding downstream 137317 10090383 ~ 10090726 (-)
G188446 NA non-coding downstream 158333 10068116 ~ 10069710 (-)
LOC111195369 NA non-coding downstream 217018 10008030 ~ 10011025 (-)
G188320 NA non-coding downstream 386025 9841791 ~ 9842018 (-)
G188610 NA non-coding upstream 14601 10243743 ~ 10250313 (-)
G188625 NA non-coding upstream 60255 10289397 ~ 10294886 (-)
G188626 NA non-coding upstream 63408 10292550 ~ 10295217 (-)
G188627 NA non-coding upstream 65333 10294475 ~ 10296786 (-)
G188628 NA non-coding upstream 69466 10298608 ~ 10298852 (-)
LOC111195437 NA other downstream 271726 9951084 ~ 9956317 (-)
ghrh ghrh,LOC103034597,LOC108438619 other downstream 2808237 7409122 ~ 7419806 (-)
G187946 mybl2,mybl2b other downstream 2837017 7388397 ~ 7391026 (-)
pdrg1 pdrg1 other downstream 3034791 7188616 ~ 7193252 (-)
LOC111195363 snrpe other downstream 3245203 6977651 ~ 6982840 (-)
G188898 NA other upstream 761675 10990817 ~ 10991394 (-)
G189055 NA other upstream 1814771 12043913 ~ 12044293 (-)
eogt eogt,LOC107729408 other upstream 1931400 12160542 ~ 12178610 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other upstream 2068907 12298049 ~ 12395532 (-)
LOC111195455 NA other upstream 2383469 12612611 ~ 12714032 (-)

Expression


Co-expression Network