LOC111195372 (LOC108410896,LOC108414677,LOC108416243)


Basic Information

Item Value
gene id LOC111195372
gene name LOC108410896,LOC108414677,LOC108416243
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 10094323 ~ 10102893 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682362.1
GGCCCCCAACACGCATCCCTCCACGCTGTCGAAGTTTTGTCATCGCTGAAATGCAGACCTTGAGCACAGACAAATTACAGATGGACACGCGTGGACGGAAGAAGGCCGTTTCAAATGAAACATCTGAGGCAAATGTTCTACCACCACAGCAGAGTAAAGCAGTATCGCCAACCGTCTTGCAAGACTTGCAGATCATGAAGATGCATCTtgaaactgaaaaagaaaaaaataaatgtcttcAGGAAACAATAAAACATCTTCAATCTGACAAGGAATTCCTTAAGGAGCAGCTTTCACGAATGACAGGTAGACCATCGTCAAGCCCTTCAGTGTCCAGTGTTTCAGGATCATCTACAGCCACTCCCAAAGTAAAAGGAAAGAAGGCTATTGGAACAGAGGAAGAGTCAAGTGGTGAGATAGCAGTTCTCTCCACAGAATCATCAACTATCGATGAATCATCTGATGAGGAGATGAAGCCTTTTTCGAAGGGGAAGAAACCAAGATCAGCAAAGCAAGATGACCTGAGTCGCACTCGAGCGAAAACTGTTCGTGGAGTAATCCTGCGTTACAAGCGTGCCCTACAAGCCTTTAACCAGGGTGGGTCGATGAAGAAGGCTTTCCAAAAAGTGGGAGTGGACCGCAACACCATATCCAGGTCATCACCGATTGCTGAGCTTGCTCTAGCGGCACCTGGTGTCTTTCAGGCTCTCCCCCCTGGAATGCCCAAGTGGAGAAGTTGTCAACATTTGTGGACAGGTGTCGAGAGGCAACGACTGATGAAATCAAGGAAAAAATCATGCAAATGAAATCATGTGGAGAACTGTTACCCATGAGCAACTGAGGCATAGTTCAGGATTTAATTTGTTCAGTTAATTAAGTTAAGAAgtatgggtaacactttataataactttcattaataagcttttaactaatgataagtaaatgtgaacaaagcattagttaatcagaatttgaatatcaACAAATGTTTACACATGGCACTTAGTTttcagcatggatattcatatttagaaatgttaacaaatcatcagaatttgaacattaataaatcacctGACAAACCtgacaaatgtttatcaattaaAGTTCATGTTTCCAAAGTGTTcattaatatttacaaatatgttaGCCACTTTTTAGTTCcgtaaaatgtgaaaaacaatagttattaatcattagttaatggtatattaattaaagttattataaagtgttgccTAAATATGTTCTTTTTGAAGGACATATTTTTTCAGCTTCTCCTGaattcttgaaaatgttttttcaggCATAGTTCAGTAGTAAAAATGTTCAGATAAAAATAAGTGTGTTCTTTTTGAAGGAGCAGATTTTTTATATCCT
>XM_022682363.1
GGCCCCCAACACGCATCCCTCCACGCTGTCGAAGTTTTGTCATCGCTGAAATGCAGACCTTGAGCACAGACAAATTACAGATGGACACGCGTGGACGGAAGAAGGCCGTTTCAAATGAAACATCTGAGGCAAATGTTCTACCACCACAGCAGAGTAAAGCAGTATCGCCAACCGTCTTGCAAGACTTGCAGATCATGAAGATGCATCTtgaaactgaaaaagaaaaaaataaatgtcttcAGGAAACAATAAAACATCTTCAATCTGACAAGGAATTCCTTAAGGAGCAGCTTTCACGAATGACAGGTAGACCATCGTCAAGCCCTTCAGTGTCCAGTGTTTCAGGATCATCTACAGCCACTCCCAAAGTAAAAGGAAAGAAGGCTATTGGAACAGAGGAAGAGTCAAGTGGTGAGATAGCAGAATCATCAACTATCGATGAATCATCTGATGAGGAGATGAAGCCTTTTTCGAAGGGGAAGAAACCAAGATCAGCAAAGCAAGATGACCTGAGTCGCACTCGAGCGAAAACTGTTCGTGGAGTAATCCTGCGTTACAAGCGTGCCCTACAAGCCTTTAACCAGGGTGGGTCGATGAAGAAGGCTTTCCAAAAAGTGGGAGTGGACCGCAACACCATATCCAGGTCATCACCGATTGCTGAGCTTGCTCTAGCGGCACCTGGTGTCTTTCAGGCTCTCCCCCCTGGAATGCCCAAGTGGAGAAGTTGTCAACATTTGTGGACAGGTGTCGAGAGGCAACGACTGATGAAATCAAGGAAAAAATCATGCAAATGAAATCATGTGGAGAACTGTTACCCATGAGCAACTGAGGCATAGTTCAGGATTTAATTTGTTCAGTTAATTAAGTTAAGAAgtatgggtaacactttataataactttcattaataagcttttaactaatgataagtaaatgtgaacaaagcattagttaatcagaatttgaatatcaACAAATGTTTACACATGGCACTTAGTTttcagcatggatattcatatttagaaatgttaacaaatcatcagaatttgaacattaataaatcacctGACAAACCtgacaaatgtttatcaattaaAGTTCATGTTTCCAAAGTGTTcattaatatttacaaatatgttaGCCACTTTTTAGTTCcgtaaaatgtgaaaaacaatagttattaatcattagttaatggtatattaattaaagttattataaagtgttgccTAAATATGTTCTTTTTGAAGGACATATTTTTTCAGCTTCTCCTGaattcttgaaaatgttttttcaggCATAGTTCAGTAGTAAAAATGTTCAGATAAAAATAAGTGTGTTCTTTTTGAAGGAGCAGATTTTTTATATCCT
>XM_022682364.1
caaaatatatCATTCTACTTTCCAAAATCCAAGAAATGTCACGAAATTTGAGTTTGTATCCGTTTAACTCCATTCACTTGTATTAATTTTGGActccctcgcgggctccctctagtggtGGCGGGGATAGGAAGTGGGTATGCTCGCCATAAACCAACTTTGTTATAGGACCTCATTTCAAGCACTGAGAGTAAAACGGACATTTTCAGACTGCTGCTACAGAAGCAAATCAGCCATACAGCCGTCTTTCTTAAGATGGACACGCGTGGACGGAAGAAGGCCGTTTCAAATGAAACATCTGAGGCAAATGTTCTACCACCACAGCAGAGTAAAGCAGTATCGCCAACCGTCTTGCAAGACTTGCAGATCATGAAGATGCATCTtgaaactgaaaaagaaaaaaataaatgtcttcAGGAAACAATAAAACATCTTCAATCTGACAAGGAATTCCTTAAGGAGCAGCTTTCACGAATGACAGGTAGACCATCGTCAAGCCCTTCAGTGTCCAGTGTTTCAGGATCATCTACAGCCACTCCCAAAGTAAAAGGAAAGAAGGCTATTGGAACAGAGGAAGAGTCAAGTGGTGAGATAGCAGTTCTCTCCACAGAATCATCAACTATCGATGAATCATCTGATGAGGAGATGAAGCCTTTTTCGAAGGGGAAGAAACCAAGATCAGCAAAGCAAGATGACCTGAGTCGCACTCGAGCGAAAACTGTTCGTGGAGTAATCCTGCGTTACAAGCGTGCCCTACAAGCCTTTAACCAGGGTGGGTCGATGAAGAAGGCTTTCCAAAAAGTGGGAGTGGACCGCAACACCATATCCAGGTCATCACCGATTGCTGAGCTTGCTCTAGCGGCACCTGGTGTCTTTCAGGCTCTCCCCCCTGGAATGCCCAAGTGGAGAAGTTGTCAACATTTGTGGACAGGTGTCGAGAGGCAACGACTGATGAAATCAAGGAAAAAATCATGCAAATGAAATCATGTGGAGAACTGTTACCCATGAGCAACTGAGGCATAGTTCAGGATTTAATTTGTTCAGTTAATTAAGTTAAGAAgtatgggtaacactttataataactttcattaataagcttttaactaatgataagtaaatgtgaacaaagcattagttaatcagaatttgaatatcaACAAATGTTTACACATGGCACTTAGTTttcagcatggatattcatatttagaaatgttaacaaatcatcagaatttgaacattaataaatcacctGACAAACCtgacaaatgtttatcaattaaAGTTCATGTTTCCAAAGTGTTcattaatatttacaaatatgttaGCCACTTTTTAGTTCcgtaaaatgtgaaaaacaatagttattaatcattagttaatggtatattaattaaagttattataaagtgttgccTAAATATGTTCTTTTTGAAGGACATATTTTTTCAGCTTCTCCTGaattcttgaaaatgttttttcaggCATAGTTCAGTAGTAAAAATGTTCAGATAAAAATAAGTGTGTTCTTTTTGAAGGAGCAGATTTTTTATATCCT

Function

NR:

description
PREDICTED: uncharacterized protein LOC108410896

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682362.1 False 1381 mRNA 0.38 6 10094323 10102893
XM_022682363.1 False 1369 mRNA 0.38 6 10094323 10102893
XM_022682364.1 True 1556 mRNA 0.38 6 10094323 10101657

Neighbor

gene id symbol gene type direction distance location
aadacl4 NA coding downstream 72646 9999315 ~ 10021677 (-)
LOC103046340 NA coding downstream 97858 9975733 ~ 9996465 (-)
LOC103033950 NA coding downstream 165902 9902960 ~ 9928421 (-)
c22h1orf158 LOC103033413 coding downstream 194731 9844118 ~ 9899592 (-)
LOC111195367 LOC106511942 coding downstream 355826 9736348 ~ 9738497 (-)
lrrc38 lrrc38,LOC108439497,LOC107685631,LOC108281009,LOC107691331,LOC107555684,LOC107568719 coding upstream 122082 10224975 ~ 10283914 (-)
LOC111195430 gria2,LOC108411138 coding upstream 731123 10834016 ~ 10859898 (-)
lrig1 lrig1,LOC107716980,LOC107557776 coding upstream 977230 11080123 ~ 11155745 (-)
suclg2 suclg2,LOC107729402,LOC107753779,LOC107699794 coding upstream 1269364 11372257 ~ 11534415 (-)
fam19a4 fam19a4,fam19a4b,LOC107655986,LOC107600333,LOC107729393,LOC107696804,LOC107558879 coding upstream 1954639 12057532 ~ 12115859 (-)
G188475 NA non-coding downstream 3597 10090383 ~ 10090726 (-)
G188446 NA non-coding downstream 24613 10068116 ~ 10069710 (-)
LOC111195369 NA non-coding downstream 83298 10008030 ~ 10011025 (-)
G188320 NA non-coding downstream 252305 9841791 ~ 9842018 (-)
G188317 NA non-coding downstream 264146 9829787 ~ 9830177 (-)
G188557 NA non-coding upstream 13069 10115962 ~ 10116742 (-)
G188603 NA non-coding upstream 125150 10228043 ~ 10229142 (-)
G188610 NA non-coding upstream 140850 10243743 ~ 10250313 (-)
G188625 NA non-coding upstream 186504 10289397 ~ 10294886 (-)
G188626 NA non-coding upstream 189657 10292550 ~ 10295217 (-)
LOC111195437 NA other downstream 138006 9951084 ~ 9956317 (-)
ghrh ghrh,LOC103034597,LOC108438619 other downstream 2674517 7409122 ~ 7419806 (-)
G187946 mybl2,mybl2b other downstream 2703297 7388397 ~ 7391026 (-)
pdrg1 pdrg1 other downstream 2901071 7188616 ~ 7193252 (-)
LOC111195363 snrpe other downstream 3111483 6977651 ~ 6982840 (-)
G188898 NA other upstream 887924 10990817 ~ 10991394 (-)
G189055 NA other upstream 1941020 12043913 ~ 12044293 (-)
eogt eogt,LOC107729408 other upstream 2057649 12160542 ~ 12178610 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other upstream 2195156 12298049 ~ 12395532 (-)
LOC111195455 NA other upstream 2509718 12612611 ~ 12714032 (-)

Expression


Co-expression Network