G189315


Basic Information

Item Value
gene id G189315
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 12515941 ~ 12518663 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU256601
AAAAAACCCTGAATAACCTTTTTTCTCAGTGTAGGGGCTACCTAATTTACTGGCTGTCTAAGGATTCACCCTATCGTGGATCAAATAATCACAAATTGAACTGGTTTGTGCTGGTTTGAGACttccaatcccatttctaagCAATGGGGCGctaagttcagcaacctagctgctggatAGCTAGTTAACTATAGGGAAACGTATGTCTTTAGAAGGGGCAGGTGGTGAATCAATTAATTAGTATTATCTACTGCATACTTCCTATGTGGTGGGGAGCTAATATGaacttttattagcttttattttattttatttttccgttccaccttaaatgctgcagcctctgccgcctgttgcaccatttaaggtgaaacgGTAAAGTTAGTTagcaatgttttttatattacaatagAGATTATCGCacattttaacaaagaaaatactcaaatttgttgtttttttggtcGCTTATGCctccatcttgccagtgattcttaGGACCAAATGGTAGAGCAAAAGGGTAAAATGGGCTTAGGCGCTGAAGCCATGACCCAGGGACCATGTGTTCAACTTCTTGGTTATGCTGCTTTGCCAACAGCAGCCggagcctgagagagcacagttggccatgCTGTCTCTGGGTGGCTAGATGGTGCGCTGTTGTATCAGAGCTGTGATCTGGCATTTTGCACTGGTTTCCTCATAATGCTGCATTAGTGGCTGTTCAAAAAGTGGTTGTGGATGAccttacatgtatcggaggaggcatgcgtGAATGTAAGACAAGACCCATCAATCAACAGCAACTGTTGAATCGTTACTACAGGGTGTTTAGAACATCCTGGTTCTAATTTAGcaaaacatcaaataaaaaacaacactgcAGCGTGGTCTTGGTAAACATTTATCCCTGTAGTGTAAACGGGGCCAATAATATTCCCTTCACCTTTATTGGTTTTAAAGTTATGGATGATATAATTTGATTGGTGGAGATAACATTCCTGggggtgtttttctcagatttcCCAGAACTGTGTAGAAGCCCTTTCCCACTCCCAGAAAGAGCAGAATGGTCACTGCTGGCTACAGAAACAAATGGCCCGAGGAACTAAATCCATTCACATTCCCTCTCCCTTCTTTTTccgaaaaaaatatttgttcacAAACACTTTCATTATTCCTCGAGCCAATGTTTGAAGATGCTTACATACGCCGATTAGTCTGGGTGTCAACCGGTGCATTTCTTCGACGTGATCTGAGGCATTTTTCTCCCAGCTGTTGCTCAGATACTAAGCTGTGCAGTGAAGTGTGTACCCACTCTGAGAGGGATCTGCAGGGAATGTCCCTGAGATACACCAGGAAGTCACTAAGCCAGCAGCAGGATGCTGCTTAgcattagtttggtttggtaCATCAGTACTTGGAGATGCAATGAAAGGATTTTTTTgcccaaactaaacaaaattaaacattaaacaacaaGGATCATGGAGAGTGTAGGTGATTTTACTACAGGTGACCATGCAGCATTATTATGAGAAGATGATCTAGGCAAAAAAGTCAACTATTTTAGGAAGGTGACGATATTTATGAAacactcaacatttttaaacatcccAGCCGACAAACCAATGAACTACAATAcagttacctcagcagtgctattctaatcattaatttttttcagcagagctattctaatcatgaatttatttcagcagtgctattcctaTCATGAATTTATTTCAGCAGAGCTATTCTGATCATTAATTGATttcagcagagctattctaatcttgAGCTTATTTCAGTAGTCAGTAcctcaaaaatatatttttacctcagtagtgctactcaGGTCACATGTTAGTTAAatgatcctaaaaaaaaaagaaaaaaatcctaattttagagaaaacactgcaatatgacttaaatatatttttattctttcacTTTTTCGGCCAAGCATCGAAAGTGCTTTTTTCATTTTCGGGCACCTATTTTCCCTTGATAAATATTCACTGCATTCCTATCAAGCTTAGCATTATGCAGAACgacatttatttgcttttttatatacagttattataggATGCAGGTGAATTAAGTAAAAGGCAGAAAATTTGGTGTGGGTGTGTCCATATCATAAACCCCACCCCTCATAAATTCCCACCTACTAGGAATCGCTCAGAGACCTAGTTTTGATCACTGagaatgtcttttttttattctgtattaaaaATTGTTACACCCCTAATATTTACCAAAAtgtcactgtgtttaatataaccTGAGGTTATTATAATTCAGTGTACTGCTGTACTCTACTATGCATTCGCCCTGTTATTTCTCCTAATTTCTGGCTCTATGTTGGATTAAGATAAATTTGACTGTAAAGGAAGTGAGATCAGACAGGTAAAACACgttatttgtaattaatttcATAGATATTTGTAAGAATTATTAAACCGTATACCAAAAAGACCTGATAGGATAGCTTTCTGTGCTGTCATTTGAAAAGTGCCTCACTTCTTGTggatctgtctttctctcagatagTTTATTGGATGCCACTGTAGATGATTTTTGTAAAGATTGTCGCTCTATTGTGATACTTTTCATGATGTAAATACAACTGTGGGGTGGAATGAATGATGGTGACAAGGTTTTGGCTGCTTAAGAACAATACAGTACTTTTTTCATACAGATCAAATTAAAGC
>TU256602
tatttttattctttcacTTTTTCGGCCAAGCATCGAAAGTGCTTTTTTCATTTTCGGGCACCTATTTTCCCTTGATAAATATTCACTGCATTCCTATCAAGCTTAGCATTATGCAGAACgacatttatttgcttttttatatacagttattataggATGCAGGTGAATTAAGTAAAAGGCAGAAAATTTGGTGTGGGTGTGTCCATATCATAAACCCCACCCCTCATAAATTCCCACCTACTAGGAATCGCTCAGAGACCTAGTTTTGATCACTGagaatgtcttttttttattctgtattaaaaATTGTTACACCCCTAATATTTACCAAAAtgtcactgtgtttaatataaccTGAGGTTATTATAATTCAGTGTACTGCTGTACTCTACTATGCATTCGCCCTGTTATTTCTCCTAATTTCTGGCTCTATGTTGGATTAAGATAAATTTGACTGTAAAGGAAGTGAGATCAGACAGGTAAAACACgttatttgtaattaatttcATAGATATTTGTAAGAATTATTAAACCGTATACCAAAAAGACCTGATAGGATAGCTTTCTGTGCTGTCATTTGAAAAGTGCCTCACTTCTTGTggatctgtctttctctcagatagTTTATTGGATGCCACTGTAGATGATTTTTGTAAAGATTGTCGCTCTATTGTGATACTTTTCATGATGTAAATACAACTGTGGGGTGGAATGAATGATGGTGACAAGGTTTTGGCTGCTTAAGAACAATACAGTACTTTTTTCATACAGATCAAATTAAAGC

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0030154 cell differentiation biological_process
GO:0048869 cellular developmental process biological_process
GO:0032502 developmental process biological_process

KEGG:

id description
ko04360 Axon guidance

RNA

RNA id representative length rna type GC content exon number start site end site
TU256601 True 2723 lncRNA 0.38 1 12515941 12518663
TU256602 False 784 lncRNA 0.34 1 12515941 12516724

Neighbor

gene id symbol gene type direction distance location
chchd4 chchd4,chchd4a,LOC107574929,LOC107718204 coding downstream 3480 12508912 ~ 12512461 (-)
LOC103039006 dnah1 coding downstream 42398 12396596 ~ 12473543 (-)
LOC103042309 LOC108435436,LOC108254777,LOC107677511,LOC104938990,LOC107574463,LOC107715804,LOC107551799 coding downstream 226930 12258794 ~ 12289011 (-)
tada3 tada3,tada3l,LOC107656064,LOC106565817 coding downstream 271621 12236886 ~ 12244320 (-)
hmces hmces coding downstream 279795 12230416 ~ 12236146 (-)
ldlrad2 ldlrad2 coding upstream 218 12518881 ~ 12526579 (-)
LOC103028365 LOC103028365,LOC108435392,LOC104949255 coding upstream 48208 12566871 ~ 12573087 (-)
atxn7l2 atxn7l2 coding upstream 55556 12574219 ~ 12592093 (-)
sypl2 NA coding upstream 75863 12594526 ~ 12612017 (-)
LOC103029205 LOC103029205,LOC108435351,LOC107659543,LOC107715787 coding upstream 143909 12662572 ~ 12666219 (-)
G189159 NA non-coding downstream 187576 12327758 ~ 12328365 (-)
G189085 rab7a,LOC107093905,LOC101061812,LOC106582926,LOC106518505 non-coding downstream 286416 12221290 ~ 12229525 (-)
G189054 NA non-coding downstream 475086 12040575 ~ 12040855 (-)
G189053 NA non-coding downstream 476853 12038777 ~ 12039088 (-)
G189052 NA non-coding downstream 506883 12008843 ~ 12009058 (-)
G189316 NA non-coding upstream 9907 12528570 ~ 12528851 (-)
G189317 usp48 non-coding upstream 10481 12529144 ~ 12533333 (-)
G189319 usp48 non-coding upstream 19587 12538250 ~ 12540612 (-)
G189344 sort1 non-coding upstream 130648 12649311 ~ 12651090 (-)
G189345 sort1 non-coding upstream 134397 12653060 ~ 12658764 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other downstream 120409 12298049 ~ 12395532 (-)
eogt eogt,LOC107729408 other downstream 337331 12160542 ~ 12178610 (-)
G189055 NA other downstream 471648 12043913 ~ 12044293 (-)
G188898 NA other downstream 1524547 10990817 ~ 10991394 (-)
LOC111195437 NA other downstream 2559624 9951084 ~ 9956317 (-)
LOC111195455 NA other upstream 93948 12612611 ~ 12714032 (-)
G189335 psma5,LOC107685984 other upstream 96249 12614912 ~ 12619566 (-)
tsen2 NA other upstream 544136 13062799 ~ 13076742 (-)
LOC103024926 dynlrb1,LOC106565026 other upstream 2799980 15318643 ~ 15322175 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other upstream 2890544 15409207 ~ 15466584 (-)

Expression


Co-expression Network