G189319 (usp48)


Basic Information

Item Value
gene id G189319
gene name usp48
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 12538250 ~ 12540612 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU256610
TTTGAATGAGTCCCAATACAGGGCAGccattaaaacaacaacaataaaaacttAGTCACACTTTATTTTGTTGGTCCCAGTTTAGGTATAGGCTTCAGGGTGACAGAGGCTTCAGGGTGATAGTGTGATTGGTTGGTTTGTCtgcagaaatgttaaaaatgtttttggtgtttggacaaatgtttaatttagctTGGTGCATTTAGTCCATCCCCAATTACAACTTTGTAAACACTATTAACATTACaaatttaattctataaacaaaataccaaataaatataGTATGGACCCTCAAGAaaactcaacaataaaaaacaaaagaagtaCCTGATAAATTTCCTCCACTCATCAACAAAGAAGAGAGGAACGATGTACAGAATATCTGtatcCTGTGGCCATTTTTGCAGCGTGGGGCGATTTTTCTCCTGGAAGAGGTTGAGCAGAGAGCTTTTCTGTTCACTGGCCATCATTCGGTTCAGAGCCTCATTCTCCTTACCTTCTCGCTCCAGTctCATGCACTGCTGGCAGGAGTCCTGTTGTTGTGTGAATTCTGGTGCTTTGGGGAAATAAACCTTTAGTTTGCTCCACACCTCGGCCGAGACCAGCCGTCTCTCGGTCTCCTGAATACTCAGACCACCATGACAGCAAAGAATGTCTTCATTAAAACTCTTCATTTCATCAGTGTCTCCATCATTCTCTTTTACACTATCTTTCGAACTTGTGCTtgatgttttttctccattggtTTTGCAGTTGGTGTGTTTggtctcctcttcttcttcctccagcTGTTCCAGTGCAAGCTGCCGCCACTGCCTCAGAGATGCCTTCCCTACCCAAAATCCTGGATCACCACTTTTCAGCTGTGCTTTGGCGAGGTTGGTCACTTCTCTGTAGTCCTCATTAAGCTGATTTTTAAGTCGGAGTACATGACATCGTTGAGTGACACAGTCTCCACACAGAAAGGATCGGTCTATTCTGGGTCCTCCACCGTAGCGACCGTAAAGGATCTCTGCAGCTGTGTGAGATATGCGCTTGGCATCGCCAACACGATCCGGGTGCAGTTTGCCGTGCGAGCACAGAAAGCTGCTGTTGTCGATCGCCTTGATGGCCGTCGAGTCATCCAGCCATTCCTTTAGCCACTCCACAGGCACAAACTC

Function

symbol description
usp48 Predicted to enable cysteine-type endopeptidase activity and thiol-dependent deubiquitinase. Acts upstream of or within cranial skeletal system development. Predicted to be active in cytosol and nucleus. Orthologous to human USP48 (ubiquitin specific peptidase 48).

NR:

description
PREDICTED: ubiquitin carboxyl-terminal hydrolase 48

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU256610 True 1163 lncRNA 0.44 7 12538250 12540612

Neighbor

gene id symbol gene type direction distance location
ldlrad2 ldlrad2 coding downstream 11671 12518881 ~ 12526579 (-)
chchd4 chchd4,chchd4a,LOC107574929,LOC107718204 coding downstream 25789 12508912 ~ 12512461 (-)
LOC103039006 dnah1 coding downstream 64707 12396596 ~ 12473543 (-)
LOC103042309 LOC108435436,LOC108254777,LOC107677511,LOC104938990,LOC107574463,LOC107715804,LOC107551799 coding downstream 249239 12258794 ~ 12289011 (-)
tada3 tada3,tada3l,LOC107656064,LOC106565817 coding downstream 293930 12236886 ~ 12244320 (-)
LOC103028365 LOC103028365,LOC108435392,LOC104949255 coding upstream 26259 12566871 ~ 12573087 (-)
atxn7l2 atxn7l2 coding upstream 33607 12574219 ~ 12592093 (-)
sypl2 NA coding upstream 53914 12594526 ~ 12612017 (-)
LOC103029205 LOC103029205,LOC108435351,LOC107659543,LOC107715787 coding upstream 121960 12662572 ~ 12666219 (-)
gpr61 gpr61,LOC108434964 coding upstream 132754 12673366 ~ 12687118 (-)
G189317 usp48 non-coding downstream 4917 12529144 ~ 12533333 (-)
G189316 NA non-coding downstream 9399 12528570 ~ 12528851 (-)
G189315 NA non-coding downstream 19587 12515941 ~ 12518663 (-)
G189159 NA non-coding downstream 209885 12327758 ~ 12328365 (-)
G189085 rab7a,LOC107093905,LOC101061812,LOC106582926,LOC106518505 non-coding downstream 308725 12221290 ~ 12229525 (-)
G189344 sort1 non-coding upstream 108699 12649311 ~ 12651090 (-)
G189345 sort1 non-coding upstream 112448 12653060 ~ 12658764 (-)
G189348 rrp9,LOC107659541 non-coding upstream 163656 12704268 ~ 12704712 (-)
G189349 NA non-coding upstream 169061 12709673 ~ 12711013 (-)
G189352 NA non-coding upstream 227398 12768010 ~ 12768711 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other downstream 142718 12298049 ~ 12395532 (-)
eogt eogt,LOC107729408 other downstream 359640 12160542 ~ 12178610 (-)
G189055 NA other downstream 493957 12043913 ~ 12044293 (-)
G188898 NA other downstream 1546856 10990817 ~ 10991394 (-)
LOC111195437 NA other downstream 2581933 9951084 ~ 9956317 (-)
LOC111195455 NA other upstream 71999 12612611 ~ 12714032 (-)
G189335 psma5,LOC107685984 other upstream 74300 12614912 ~ 12619566 (-)
tsen2 NA other upstream 522187 13062799 ~ 13076742 (-)
LOC103024926 dynlrb1,LOC106565026 other upstream 2778031 15318643 ~ 15322175 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other upstream 2868595 15409207 ~ 15466584 (-)

Expression


Co-expression Network