G189348 (rrp9,LOC107659541)


Basic Information

Item Value
gene id G189348
gene name rrp9,LOC107659541
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 12704268 ~ 12704712 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU256666
TTAATAATGGAGCAGTCTTTAGATCCAGAGAAGATGTACTTCTCATCCGGGGTGATGACCAGACACGTGACGGGAAGTTGGTGTCCTCTCAATAACCGGATTTCTGCAGGGTCTGGGGCTACGAGctcaTCAGCTATCAGCCTCTGCAGTTTGCctctctgctccagCACATCCTCGTGCAACCGTCCAGCAATCAGGTCTGACTCAAACTCCTCGTCCTCCGCCTTCTTCTCC

Function

symbol description
rrp9 Predicted to enable snoRNA binding activity. Predicted to act upstream of or within rRNA processing. Predicted to be part of small-subunit processome. Orthologous to human RRP9 (ribosomal RNA processing 9, U3 small nucleolar RNA binding protein).

NR:

description
PREDICTED: U3 small nucleolar RNA-interacting protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU256666 True 234 lncRNA 0.53 3 12704268 12704712

Neighbor

gene id symbol gene type direction distance location
gpr61 gpr61,LOC108434964 coding downstream 17150 12673366 ~ 12687118 (-)
LOC103029205 LOC103029205,LOC108435351,LOC107659543,LOC107715787 coding downstream 38049 12662572 ~ 12666219 (-)
sypl2 NA coding downstream 92251 12594526 ~ 12612017 (-)
atxn7l2 atxn7l2 coding downstream 112175 12574219 ~ 12592093 (-)
LOC103028365 LOC103028365,LOC108435392,LOC104949255 coding downstream 131181 12566871 ~ 12573087 (-)
LOC103030591 LOC108435310,LOC108281021,LOC107715788,LOC107659540,LOC107575639 coding upstream 9776 12714488 ~ 12756183 (-)
LOC111195440 NA coding upstream 66023 12770735 ~ 12785185 (-)
ippk ippk,LOC107755999,LOC107658385 coding upstream 116163 12820875 ~ 12854393 (-)
LOC103025083 LOC108431510,LOC107586924,LOC107756006,LOC107593103,LOC107704447,LOC105893506 coding upstream 176110 12880822 ~ 12884782 (-)
shisa5 NA coding upstream 200618 12905330 ~ 12922980 (-)
G189345 sort1 non-coding downstream 45504 12653060 ~ 12658764 (-)
G189344 sort1 non-coding downstream 53178 12649311 ~ 12651090 (-)
G189319 usp48 non-coding downstream 163656 12538250 ~ 12540612 (-)
G189317 usp48 non-coding downstream 170935 12529144 ~ 12533333 (-)
G189316 NA non-coding downstream 175417 12528570 ~ 12528851 (-)
G189349 NA non-coding upstream 4961 12709673 ~ 12711013 (-)
G189352 NA non-coding upstream 63298 12768010 ~ 12768711 (-)
G189376 NA non-coding upstream 175233 12879945 ~ 12880344 (-)
G189380 NA non-coding upstream 186122 12890834 ~ 12891269 (-)
G189381 NA non-coding upstream 190151 12894863 ~ 12896608 (-)
G189335 psma5,LOC107685984 other downstream 84702 12614912 ~ 12619566 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other downstream 308736 12298049 ~ 12395532 (-)
eogt eogt,LOC107729408 other downstream 525658 12160542 ~ 12178610 (-)
G189055 NA other downstream 659975 12043913 ~ 12044293 (-)
G188898 NA other downstream 1712874 10990817 ~ 10991394 (-)
tsen2 NA other upstream 358087 13062799 ~ 13076742 (-)
LOC103024926 dynlrb1,LOC106565026 other upstream 2613931 15318643 ~ 15322175 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other upstream 2704495 15409207 ~ 15466584 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other upstream 3640989 16345701 ~ 16460928 (-)
ptpdc1 NA other upstream 3864911 16569623 ~ 16599317 (-)

Expression


Co-expression Network