G189335 (psma5,LOC107685984)


Basic Information

Item Value
gene id G189335
gene name psma5,LOC107685984
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 12614912 ~ 12619566 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU256647
CCACGTTAACAGGTTTGGCCACAACCTCATTCCATAATTTGCTAATTTGACAGAGCCTGATGacatattactattttttttaatgattggcGATGTAAACCTGGTATTGTTTAATACTAAGGTCAGacgatttatatatatatttttatttatttatgctgatatacagtacatttacagtACGTTGTtgaaggtggaatatggagctagcaTACGTTCCTTGATTTGCAAGCTCAGAACTCTGATAAAGATAAGAATTAAAAGGGGCAGATGGGATGGTGGAGGGGTGTGAAGACTTGACATAAGGTACGTAAATTCAAATAGATGGTATTTATAGAGAGCTGGATAAGAGGCGGGACATAGGGCATGTTCCTCCACCCAAACATTAGTTATTTCATAAATCCATTTAATGCTCTCAACTATTTCCATCCCTTAAAATTATAGTTTTAAGCAACATACATCATTAgtataaaaaacttaaaatataaattaaagtttgtttggtaTATAGTATTTGTACCTTGTGATAGACTTCCTGCAGAGAGCTCTGAGCGCCCTCAGACGCAGATCCAATAGCTCGGGCGTCACACTGCACGAACGTGCCTGAGGGGTCCATATGGTACAGTTGGGGTCCTTTTTCATCCACACCTCCAAAAAGCAAGGCGACACCAAAGGGACGGCTCATGGCACCAGGGTCTGCGTCCTCCTCTCCAAACTGAAGAGCCAGGTTAGACACCGCCTGAGTCACACTTTCTACCGTCATCGTCTCGTTGTAGGTGAACCAGTGGTTCTGTGTTTCCACCCGTGCTTTGTCGATAAGCGTTTTGGCATCAGCTATCAATCCACTCATAGCACAACCGATGTGAGTGTCAATCTCTACGATCTTCTCGATACTGCTGGGCTCCATCAGCGGCGAGGTGATTCTCTTCTCCACAGCAAGACATACTCCTTCTGACGTCTGGATGCCAATGGCCGTAGACCCTAGcTTAATAGCTTCAATCGCATACTCCACTTGGAAAAGTCTTCCCTCGGGAGAGAAAGTGTTCACGCCTCTGTCGTATTCTGATCTCGTCAGGAACATCCTGAATAAGAAATGTCTGCAGCTGAACAGTGAGTCTGCTTGTTTCAACAGGGAAGGAAGCGGCCTCGTGAAACTGCTCcgaagaaaaaaacagacccGGGACTCTTGTTTTTTGGTTCCTACCt

Function

symbol description
psma5 Predicted to be involved in proteasomal protein catabolic process. Predicted to act upstream of or within proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of proteasome core complex, alpha-subunit complex. Predicted to be active in nucleus. Orthologous to human PSMA5 (proteasome 20S subunit alpha 5).

NR:

description
PREDICTED: proteasome subunit alpha type-5 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU256647 True 1206 TUCP 0.43 8 12614912 12619566

Neighbor

gene id symbol gene type direction distance location
sypl2 NA coding downstream 2895 12594526 ~ 12612017 (-)
atxn7l2 atxn7l2 coding downstream 22819 12574219 ~ 12592093 (-)
LOC103028365 LOC103028365,LOC108435392,LOC104949255 coding downstream 41825 12566871 ~ 12573087 (-)
ldlrad2 ldlrad2 coding downstream 88333 12518881 ~ 12526579 (-)
chchd4 chchd4,chchd4a,LOC107574929,LOC107718204 coding downstream 102451 12508912 ~ 12512461 (-)
LOC103029205 LOC103029205,LOC108435351,LOC107659543,LOC107715787 coding upstream 43006 12662572 ~ 12666219 (-)
gpr61 gpr61,LOC108434964 coding upstream 53800 12673366 ~ 12687118 (-)
LOC103030591 LOC108435310,LOC108281021,LOC107715788,LOC107659540,LOC107575639 coding upstream 94922 12714488 ~ 12756183 (-)
LOC111195440 NA coding upstream 151169 12770735 ~ 12785185 (-)
ippk ippk,LOC107755999,LOC107658385 coding upstream 201309 12820875 ~ 12854393 (-)
G189319 usp48 non-coding downstream 74300 12538250 ~ 12540612 (-)
G189317 usp48 non-coding downstream 81579 12529144 ~ 12533333 (-)
G189316 NA non-coding downstream 86061 12528570 ~ 12528851 (-)
G189315 NA non-coding downstream 96249 12515941 ~ 12518663 (-)
G189159 NA non-coding downstream 286547 12327758 ~ 12328365 (-)
G189344 sort1 non-coding upstream 29745 12649311 ~ 12651090 (-)
G189345 sort1 non-coding upstream 33494 12653060 ~ 12658764 (-)
G189348 rrp9,LOC107659541 non-coding upstream 84702 12704268 ~ 12704712 (-)
G189349 NA non-coding upstream 90107 12709673 ~ 12711013 (-)
G189352 NA non-coding upstream 148444 12768010 ~ 12768711 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other downstream 219380 12298049 ~ 12395532 (-)
eogt eogt,LOC107729408 other downstream 436302 12160542 ~ 12178610 (-)
G189055 NA other downstream 570619 12043913 ~ 12044293 (-)
G188898 NA other downstream 1623518 10990817 ~ 10991394 (-)
LOC111195437 NA other downstream 2658595 9951084 ~ 9956317 (-)
tsen2 NA other upstream 443233 13062799 ~ 13076742 (-)
LOC103024926 dynlrb1,LOC106565026 other upstream 2699077 15318643 ~ 15322175 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other upstream 2789641 15409207 ~ 15466584 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other upstream 3726135 16345701 ~ 16460928 (-)
ptpdc1 NA other upstream 3950057 16569623 ~ 16599317 (-)

Expression


Co-expression Network