ldlrad2 (ldlrad2)


Basic Information

Item Value
gene id ldlrad2
gene name ldlrad2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 12518881 ~ 12526579 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254537.3
gAGGATGGAGGATGGTGGCAATGAATGGAGTCATCCAGGGTCTCTGCTGCCCCTCCTCTGAAGACCTCACCCCTCCACTTTTGGCTCAGTTCTCCCGTATAAACTGAAATGCGGTCAGTTTTAGAGGTTTAGCATGGAGCAGTGTGTTCTCAGGAGGAGCTGAAGGAGAGCGTGGACCCTGTTCTGGAGTCTTAGCTGAACTTCAGAGGAGCGGGATGAGCAGGGAGCCGGAGCGGCCGCGGGTTCATCTCCTGCCCGGCTGGTTGCTTATTTTCAGCCTAATGGCACTGAGGGCTCACGCCATCGAGACAGTGAATGTGGCCGATTTCTGCGGCCAGACGGTTCAGGCGGACGGCATGGTCGTCAGATCCCACCAAGAGTCACGGAAGTATTACTTCGTCACCAAAGGCACCGACTGCCACCTCACCATGCTGTCAGCCACGCCCCGGGACAAGGTGCAGTTCCACTTCCGCTTCTTCCTCGTCTACAGCCTGCTGAGGGTGTCCCCCTTCAGCCCCGTGCCTCTTTCGCCCGAGTCCGCCAAGGGGCCACCGTTTTTAGGCCCGACCCGGGCTGAAACTCGAATGGAGCCCACTCCTGGAGAGGGTGCTGCTGCAGAGGCAGACCCCTGCCACGCTGGCTCCTATATCCAGTTCTACGATGGACGGGATAAAACGGCACCCCCTATTGGCCCACCGCTGTGTGGCAAGAGCCCGCCTCGTCCGGTCCTGTCGACTGGGCCCTATCTGACCCTGCGATTGGTGACCAGAGGGACCCAGCCCCGGGTGGACTTCGTGGGAGACTTCACATCATTCAGACTGGGGTTTAATCAGTCTGAATGCAGTGGGGAGCCCTACTTCAACTGCCGTAATGGAAAGTGCATTCCCATGAGTCTGGTTTGTGACGACGACAAAGGACTCGACAACTGCGGTGACGGAACAGACCTGCAAGACTACCCAGGATGCCTCAGTTTGTTGTCTACAGCAGCTGCCCGTCAACCCATAGTGACTCCTCCTCCAACCGTGCTGAACCTGCCTACCCTCAGGGCAACAACTCTGGAGAAGTGTAGCGGGCCTAATGCCATCCCCGACTTGGACTCTATTACAGactcgCAGACGTACGTCTCTCTGCTGGCCCTGTACGTGGTTCTGGGCGTGACGGCCGGCTCTGTGGTGCTATGCTGGTGTTGCTGGTCCCCCGGCTGGTTCCTGTGGCGGGTGAGTGTGTGTCGTTTCCTGCCCTGCTGTAACTCCTGCTGTGCCTCCTGTCAGCTGTGCGGCCGGAGCTGCTCCCCAAACAAAGAGCATCGTCTGGCTAAGGTCACGCCCCAGGCTGCCCCCTCACCCGTGGCCTCGCCGACCACCGTGGCCGTGTAGACTCACAGAGGCTCCACAAAGGACCAGAGACTTGGCGGGAAACAGGCGGCACTCCAGGATGGACGCTCAATAAAGGAAAGCTTTTGTTTGACGAAGGAGGTCGTTGAATtggtagagtgtgtgtgatgattaGGGCTTGACCGATGTGAACATTTTGTCACCAATGTCTGATTTAAAGAGCGCAGAATTCTCAAGACTGATAATGAACAGTGAAGTTCATTAGCAAACATTTTAGTAAAACAGTGCTTTAGTCACAGTTGACAAACAGCTGTTTGGTTATTGTT

Function

symbol description
ldlrad2 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human LDLRAD2 (low density lipoprotein receptor class A domain containing 2).

NR:

description
low-density lipoprotein receptor class A domain-containing protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254537.3 True 1660 mRNA 0.57 5 12518881 12526579

Neighbor

gene id symbol gene type direction distance location
chchd4 chchd4,chchd4a,LOC107574929,LOC107718204 coding downstream 6420 12508912 ~ 12512461 (-)
LOC103039006 dnah1 coding downstream 45338 12396596 ~ 12473543 (-)
LOC103042309 LOC108435436,LOC108254777,LOC107677511,LOC104938990,LOC107574463,LOC107715804,LOC107551799 coding downstream 229870 12258794 ~ 12289011 (-)
tada3 tada3,tada3l,LOC107656064,LOC106565817 coding downstream 274561 12236886 ~ 12244320 (-)
hmces hmces coding downstream 282735 12230416 ~ 12236146 (-)
LOC103028365 LOC103028365,LOC108435392,LOC104949255 coding upstream 40292 12566871 ~ 12573087 (-)
atxn7l2 atxn7l2 coding upstream 47640 12574219 ~ 12592093 (-)
sypl2 NA coding upstream 67947 12594526 ~ 12612017 (-)
LOC103029205 LOC103029205,LOC108435351,LOC107659543,LOC107715787 coding upstream 135993 12662572 ~ 12666219 (-)
gpr61 gpr61,LOC108434964 coding upstream 146787 12673366 ~ 12687118 (-)
G189315 NA non-coding downstream 218 12515941 ~ 12518663 (-)
G189159 NA non-coding downstream 190516 12327758 ~ 12328365 (-)
G189085 rab7a,LOC107093905,LOC101061812,LOC106582926,LOC106518505 non-coding downstream 289356 12221290 ~ 12229525 (-)
G189054 NA non-coding downstream 478026 12040575 ~ 12040855 (-)
G189053 NA non-coding downstream 479793 12038777 ~ 12039088 (-)
G189316 NA non-coding upstream 1991 12528570 ~ 12528851 (-)
G189317 usp48 non-coding upstream 2565 12529144 ~ 12533333 (-)
G189319 usp48 non-coding upstream 11671 12538250 ~ 12540612 (-)
G189344 sort1 non-coding upstream 122732 12649311 ~ 12651090 (-)
G189345 sort1 non-coding upstream 126481 12653060 ~ 12658764 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other downstream 123349 12298049 ~ 12395532 (-)
eogt eogt,LOC107729408 other downstream 340271 12160542 ~ 12178610 (-)
G189055 NA other downstream 474588 12043913 ~ 12044293 (-)
G188898 NA other downstream 1527487 10990817 ~ 10991394 (-)
LOC111195437 NA other downstream 2562564 9951084 ~ 9956317 (-)
LOC111195455 NA other upstream 86032 12612611 ~ 12714032 (-)
G189335 psma5,LOC107685984 other upstream 88333 12614912 ~ 12619566 (-)
tsen2 NA other upstream 536220 13062799 ~ 13076742 (-)
LOC103024926 dynlrb1,LOC106565026 other upstream 2792064 15318643 ~ 15322175 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other upstream 2882628 15409207 ~ 15466584 (-)

Expression


Co-expression Network