G189344 (sort1)


Basic Information

Item Value
gene id G189344
gene name sort1
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 12649311 ~ 12651090 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU256661
tgtgcttCAGCTTTCTCACCACTGGAAATCATCCAGTGTGCACGGGCATTGTGTCGGCTGCTTGGAGATGACGTAGTCTCTTCCGTTCCAGCATACGGAGTCTTTCCGTAACCGTAGATACTTTTCCTTAAATCCCAGCAAGCAGCCATCAGTCGGATCACTTTTGTTGTCGGAGTGGGCCAGCCACTGCACGTAATCCCCCTCCCCACAATCTCTGGAGAAAAGCTGCTTGAAGTCTATAGTGACAGACACCCAGTACTGACTCATCATGGACTCCCTATAACCCCACAGACTGAGGTTCATGGACCGAGCTCCAGGCTCAGACGCCAACCCCGTGAAGTATATCGGC

Function

symbol description
sort1 Enables several functions, including nerve growth factor binding activity; nerve growth factor receptor activity; and neurotensin receptor activity, non-G protein-coupled. Involved in several processes, including cell surface receptor signaling pathway; negative regulation of lipoprotein lipase activity; and post-Golgi vesicle-mediated transport. Located in several cellular components, including clathrin-coated pit; cytoplasmic vesicle; and perinuclear region of cytoplasm. Is integral component of membrane.

NR:

description
PREDICTED: sortilin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU256661 True 349 lncRNA 0.52 2 12649311 12651090

Neighbor

gene id symbol gene type direction distance location
sypl2 NA coding downstream 37294 12594526 ~ 12612017 (-)
atxn7l2 atxn7l2 coding downstream 57218 12574219 ~ 12592093 (-)
LOC103028365 LOC103028365,LOC108435392,LOC104949255 coding downstream 76224 12566871 ~ 12573087 (-)
ldlrad2 ldlrad2 coding downstream 122732 12518881 ~ 12526579 (-)
chchd4 chchd4,chchd4a,LOC107574929,LOC107718204 coding downstream 136850 12508912 ~ 12512461 (-)
LOC103029205 LOC103029205,LOC108435351,LOC107659543,LOC107715787 coding upstream 11482 12662572 ~ 12666219 (-)
gpr61 gpr61,LOC108434964 coding upstream 22276 12673366 ~ 12687118 (-)
LOC103030591 LOC108435310,LOC108281021,LOC107715788,LOC107659540,LOC107575639 coding upstream 63398 12714488 ~ 12756183 (-)
LOC111195440 NA coding upstream 119645 12770735 ~ 12785185 (-)
ippk ippk,LOC107755999,LOC107658385 coding upstream 169785 12820875 ~ 12854393 (-)
G189319 usp48 non-coding downstream 108699 12538250 ~ 12540612 (-)
G189317 usp48 non-coding downstream 115978 12529144 ~ 12533333 (-)
G189316 NA non-coding downstream 120460 12528570 ~ 12528851 (-)
G189315 NA non-coding downstream 130648 12515941 ~ 12518663 (-)
G189159 NA non-coding downstream 320946 12327758 ~ 12328365 (-)
G189345 sort1 non-coding upstream 1970 12653060 ~ 12658764 (-)
G189348 rrp9,LOC107659541 non-coding upstream 53178 12704268 ~ 12704712 (-)
G189349 NA non-coding upstream 58583 12709673 ~ 12711013 (-)
G189352 NA non-coding upstream 116920 12768010 ~ 12768711 (-)
G189376 NA non-coding upstream 228855 12879945 ~ 12880344 (-)
G189335 psma5,LOC107685984 other downstream 29745 12614912 ~ 12619566 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other downstream 253779 12298049 ~ 12395532 (-)
eogt eogt,LOC107729408 other downstream 470701 12160542 ~ 12178610 (-)
G189055 NA other downstream 605018 12043913 ~ 12044293 (-)
G188898 NA other downstream 1657917 10990817 ~ 10991394 (-)
tsen2 NA other upstream 411709 13062799 ~ 13076742 (-)
LOC103024926 dynlrb1,LOC106565026 other upstream 2667553 15318643 ~ 15322175 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other upstream 2758117 15409207 ~ 15466584 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other upstream 3694611 16345701 ~ 16460928 (-)
ptpdc1 NA other upstream 3918533 16569623 ~ 16599317 (-)

Expression


Co-expression Network