G190405 (fbln2,LOC108424659,LOC107727849,LOC107691338)


Basic Information

Item Value
gene id G190405
gene name fbln2,LOC108424659,LOC107727849,LOC107691338
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 16345701 ~ 16460928 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU258140
ATTATTTGGTGTTATTAATCTGATTCTATTTAAAATCAGATAATTTACATTctttcaaattcataaagttccTTTTTAGTGCGTCTCTGATCCGGACGGATGATTTAAGAGATGCTGAAGAGATGAATTAATACGTTTGTGTTTCCCCCTGAGAGATATAGATAACATAAAGctaatataaacacattaacaggcttaaaaagagaaaataacaaatacaataaacatatataaacattttctattcTGTACTGAAGCTCACACATCATTAAATATACAGAGTGTGAATGTCAAAGACAGCGGCTGCGTCCCAATTGCACACCatacacactaatactataaaatacagtatacactgtatattaatattaataatgaggGTTTGGGAGTTtagtacattaaaaatattaacatgCTAACCTcgtttaattttttcttttatatttttaattcatttattatccTCCCTTTCTTCTTTATATATGATGATCATCCCTAAAGTGAGTTCCAGCATttctaaatttgtattttaaattttcAAATATTAGAAAGACCCTaaaaacttattattttaacaatgaAAATGCACTAGCCAAaccacgaacacacacacacacacacacacacacgcacgcactcATGAGTATGAGAATGAGTAAAAATGAGGATTtctgtactttactttactttttttttttttctcgtagAAACCAGGTTAATATCACAGCCCAAacctgtttgttttatttaatagatttgtttgtttgctgtaaTGTTTAATGTCATTTTTGTTGAAACCTTTTACCTCTGTTTTGGAAGAGAAAAGGCAGGGtagtatttttctattttattttctttgtttttagggTAATTTAGattagttttattagttttagggGATTTGTTTGTTGTCTTGGCCTGGGGTTAGCTGGAAGCTTCTgatcctgtttttttgtttgtttgtttgttatcttAAGATTTTGaagcactataaggcacactagattataaggcacattttaagcaactctagtaaggaacatgggtgtccatgtttttttgccttctaattcagcagatctcagtGGTGGTCAGTGtagctaagttaagttaagttaaacgagtgctggacgttaatctacacagaattttagcttagatttacagatttaaactaaggctaggtgcagcagcattagtattacaGGAAGCCAAAGACAAGCACTCTagggtgcactggattataaggccatgttaagcgacactagtaaggaacaggggtgtcgccatgtttttttccttctaattcagcagctctcactgctgggtggtggtggtcaGTGTcgctaagtaaagtaaagctaagcttagtaaacaaaactgtaattcttaaaaaaaatatatatatatatatt
>TU258141
ttttacagtaagtaattgattttaaatgaGCTGGAAAACTCATATAAACGTGGAGTGAAGGGATCCAGCGCTGAGGGAGGACTGGGAAACATTGCTTTCATGAAAAAATTAATGAGGTGTAACGAATAAAAAACTTTAACAAAAAGCAGGAGATAAACTGCAACCGTATAAATAATATCCATCAGAGGGTGtttttaatacttaaaaaaagacttttagcTCAGAAGATAAAACTCTCTGCAGTCCCGGACCCCCAGTTCGCTCCAGTAAGTGCTTGgtgagatttttaaaaaaaattaattttttaaaaagagcgtaaaaaataaaaaataaaaaagctcagCACCAATGAACGGACAGCTAGCGAGCGACTCCCGCTCTCCAGCTTTTAGCACCAAAAATCAGAAGTTTAGAGCTCCGTTCCAGAGAACGCACCGCCCTGCACTGCTTCAGAAACATTCCCCAGATCCAGCTCTtcccaagtcctgctggaaaatgaaatccgcatctccataaaagttaaaagttgttctcagcagagggaagctgtaagatatgaagtgctgtaagattttgtgggaaaacaaaactgcactgactaaATTTGATTGGTTTGATTTAAGGCGATGCGAGTTAGTGTGTCAttgctatcgtaacgtcaggaaaagtacactgatcaaaacatgcaaaagacatgtactattAATTGGCGCCCGTGttgccgagatagcgatgaacgtctgactgttggtgtctgtctaggttgtattcaatCAGTGGAGCAATACTCAAATAcaaaaatttacctaaacacacctcattttcagaCGACCACGCCCATCTgtgtagatatacagctctagaaaaaaaatgaagagagcacttcagtttctgaatcagtttctctgattttgctatttataggtttatgtttgagtaaaatgaacattgttgttttattctataaactacagacaacatttctcccaaattcctaataaatatattatagtcatttagagcatttattaagttcatattcgtcAAGTTTgaaagttttaagggttcataaatcaatatttgttgcaataaccctgtttttaatcacctcctccaccagtcttacacactgcttttggataactttatgctgctttactcctggtgtaaaaatttaagcagttcagtttggtggtttgatggtttgtgatcatccatcttcctcttgattatattccagaggtttttaatttggtaaaatcaaagaaactcatcatttttaggtgatctcttttttttttttccagagctgcatattcaGAAGCATTTGTTGGTCATCTTTACTAAAACTTCTTGATGATTTTAAAGGATCATATTTCGGTATTTTCTGAATTTAAGAAGTTATAAAGGAGGTATTAAACAGTGAAACAGTGCAGGGCAGCAGATCCCCATGATCAGAGTTAAGAACCACAGTCAGTATAAATCAGTGTGGGTCCTGACTGATCTCAGAGCAGTCTCTACGCGGCGTGAGAGGTGATGAAGACGTAGATGCGAGCGATGAAGCTGGTGACGGTTCCCTGCCGCAGGAGCTTCATCTCCACGTCAATGAGGAAGTCCCGCGGGCCGGGGATCTGCCGCTGCAGGTACACCGCCCCGGTGAAGCTGTTGAGGCGGCGGGTGCTGAAGAAGCCCTCCTCGTTTCCTCGCGGGATGCTGATCAGGATGTTGTCGCCGGTGTACGCCGGAGACGGACCGATCCGGAAGATCTGCGCCGGAATCACGATGTTGGTCTGGAAGCTCAGCTGGTAGTAGGTGATTCTCAGAGGCAGGTTCTGACAGTCCTGGAAGTTGGGGCAACTGGAACGTT
>TU258142
ATTATTTGGTGTTATTAATCTGATTCTATTTAAAATCAGATAATTTACATTctttcaaattcataaagttccTTTTTAGTGCGTCTCTGATCCGGACGGATGATTTAAGAGATGCTGAAGAGATGAATTAATACGTTTGTGTTTCCCCCTGAGAGATATAGATAACATAAAGctaatataaacacattaacaggcttaaaaagagaaaataacaaatacaataaacatatataaacattttctattcTGTACTGAAGCTCACACATCATTAAATATACAGAGTGTGAATGTCAAAGACAGCGGCTGCGTCCCAATTGCACACCatacacactaatactataaaatacagtatacactgtatattaatattaataatgaggGTTTGGGAGTTtagtacattaaaaatattaacatgCTAACCTcgtttaattttttcttttatatttttaattcatttattatccTCCCTTTCTTCTTTATATATGATGATCATCCCTAAAGTGAGTTCCAGCATttctaaatttgtattttaaattttcAAATATTAGAAAGACCCTaaaaacttattattttaacaatgaAAATGCACTAGCCAAaccacgaacacacacacacacacacacacacacgcacgcactcATGAGTATGAGAATGAGTAAAAATGAGGATTtctgtactttactttactttttttttttttctcgtagAAACCAGGTTAATATCACAGCCCAAacctgtttgttttatttaatagatttgtttgtttgctgtaaTGTTTAATGTCATTTTTGTTGAAACCTTTTACCTCTGTTTTGGAAGAGAAAAGGCAGGGtagtatttttctattttattttctttgtttttagggTAATTTAGattagttttattagttttagggGATTTGTTTGTTGTCTTGGCCTGGGGTTAGCTGGAAGCTTCTgatcctgttttttttttttttttttttttttgaagattttgcaGCAACGGTTCCATTTATGTGCTGCCAATGATGCTTATTATTAGATATGAATatagatattataatataacgttgctcattactcattacAGTTTTACTTTTCT

Function

symbol description
fbln2 Predicted to enable calcium ion binding activity. Predicted to act upstream of or within extracellular matrix organization. Predicted to be located in collagen-containing extracellular matrix and extracellular region. Is expressed in several structures, including cardiovascular system; hypochord; intestinal bulb; mesoderm; and tail bud. Orthologous to human FBLN2 (fibulin 2).

NR:

description
PREDICTED: fibulin-2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU258140 False 1415 lncRNA 0.32 2 16396305 16406933
TU258141 True 1867 TUCP 0.41 3 16402791 16460928
TU258142 False 1086 lncRNA 0.30 3 16345701 16406933

Neighbor

gene id symbol gene type direction distance location
LOC103029523 iqsec1b,iqsec1,LOC108424663,LOC107691341,LOC107551128 coding downstream 207408 15869135 ~ 16138293 (-)
LOC103030277 LOC108415871 coding downstream 494510 15846861 ~ 15851191 (-)
LOC103047460 NA coding downstream 511980 15832088 ~ 15833721 (-)
LOC103030908 LOC103362890,LOC104939527,LOC101063010 coding downstream 520462 15814220 ~ 15825239 (-)
acad9 acad9,LOC107749438,LOC107566791,LOC107551129 coding downstream 561047 15765883 ~ 15784654 (-)
wnt7a wnt7a,wnt7aa,LOC108424657,LOC107749431,LOC107685644,LOC107727836 coding upstream 59616 16520544 ~ 16556758 (-)
phf2 phf2 coding upstream 278359 16739287 ~ 16794230 (-)
fam120a fam120a,LOC107685640,LOC107691381 coding upstream 335940 16796868 ~ 16827437 (-)
cstf1 cstf1 coding upstream 414480 16875408 ~ 16884596 (-)
LOC103036783 NA coding upstream 425783 16886711 ~ 16954694 (-)
G190400 NA non-coding downstream 17520 16309267 ~ 16328181 (-)
G190401 NA non-coding downstream 25307 16302886 ~ 16320394 (-)
G190312 NA non-coding downstream 46736 16298744 ~ 16298965 (-)
G190304 NA non-coding downstream 48377 16202590 ~ 16297324 (-)
G190308 NA non-coding downstream 102611 16242130 ~ 16243090 (-)
G190420 NA non-coding upstream 55406 16516334 ~ 16565626 (-)
G190421 NA non-coding upstream 55832 16516760 ~ 16553212 (-)
LOC111195385 NA non-coding upstream 99573 16560501 ~ 16566005 (-)
G190430 NA non-coding upstream 197293 16658221 ~ 16658494 (-)
G190433 NA non-coding upstream 225228 16686156 ~ 16686622 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other downstream 879117 15409207 ~ 15466584 (-)
LOC103024926 dynlrb1,LOC106565026 other downstream 1023526 15318643 ~ 15322175 (-)
tsen2 NA other downstream 3268959 13062799 ~ 13076742 (-)
LOC111195455 NA other downstream 3631669 12612611 ~ 12714032 (-)
G189335 psma5,LOC107685984 other downstream 3726135 12614912 ~ 12619566 (-)
ptpdc1 NA other upstream 108695 16569623 ~ 16599317 (-)
cass4 NA other upstream 372922 16833850 ~ 16869461 (-)
irf6 irf6,LOC107599105,LOC106565674 other upstream 720186 17181114 ~ 17193747 (-)
G190788 NA other upstream 756393 17217321 ~ 17219780 (-)
mrpl20 mrpl20 other upstream 1678435 18139363 ~ 18213530 (-)

Expression


Co-expression Network