atxn7l2 (atxn7l2)


Basic Information

Item Value
gene id atxn7l2
gene name atxn7l2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 12574219 ~ 12592093 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682391.1
CGCCGCTGTACTGGCCCGGCTCTCGGGAGCGCGCATCCTGACGTAAGCGTCTCTGCCGCGCGGTGATGATGGCGGTGCGTGAACGCGCAGTTCAAGTAATGGCTGCTCTGGATCGGCGAGTGCTTTGTCTCGACGACTTCGTGGGCCAAAGCTGGAGCGCCTGGGCGGAAAGGGCCGGCCTGACCGCCGCGGACGGGTCCGATGGGGAAGACTGCAGCAAGAATGGCAAGAAAACGACGGAAACCATGACATTAAGGAAGGAGGATATGTCCATCTTCGGGCACTATCCTGGACACGATGACTTCTACCTGGTGGTGTGCAGCCAGTGCAGTCAGGTGGTGAAGCCGCAGGCCTTCGAGAAGCACTTTGAGAGAAAGCACGGGCCTGTGGGGAAGCTCTATGCACACCTGCGCTCCACTCCACCTGCCGCCCAGCAGCGGGCGCACTCCCGCCACGGACACACCCCTCCCGCCCCGGGGCACGGGACGGCCTCGTGGAGTGGCAGGAGTCAGGGCTCTGGTGGACCCCCGCGGCCGGCACCCCAGTCTCCCTCCACGCCCCCTCAGTTCAGACACAGCAAGACGAGCAAGGACGCGGTCCGGCTCTCTCCTCTGGACAAGACCTCCAGCTCTGCTCACTCAGAGTCCTCAGTCTTCAAGCAGCCTCCACCTTTGGAACCTCCTCGAAACTCTCCTCCTCCAAGCCTAAGAGACCCACCCTGGCCTCACGGAGGACCCTCGCCCAGCCGACCTGCGGCCACGGAGAAATCACCCAGTCAGAGAGCGGAGACCGGCTCTTCCCCTGCCACACCTGGACACGCCCGAGGTTCCAGGCCTCATAAAGTTTCCAAAAAAGAATGTGACCTGGATAAACACTGTGGCGTGTTGGATCCAGAGAGGAAGAAAGTTTGTACTCGGCTCTTAACCTGCAATATCCATTCGGTTCACCAGCGGCGGAAGGTCATGGGCAGAAGTAAAAACTTTAACCAGCTGTTGGCGGAGATGAAGATGGGTTCCAAGAGTCGAGACCGGGTAGCGCCGTCCCTCGAGGGCCCGGCTGCCCCGCTCCCCGCCCAGGAGACTCCCAGAGAACCCACCAACTCCCCACACTGCAGGAGACCGCTGGCCAACTCTCCTGCCTTCAGATTAGAAAAGACGCGGACGCTATCTGAAAGCGCCCCTGAGGAGGAGAAAGCTGTTCGGGAGGAGGGGAGTGCACGTGCGCCTTCACCCCTCACTCAGGGCCGGATCTCCAGCGACGAGAGCGAGGGAGAGGCTGCTGAGGAACCTGACTGGCACTCTAGCCCGTGGCACCCGAAACCACTCGCGTACTGTACATTTGGCAGTTGTGCTCTGGGCCATGGCATCTTCACGTTTGACCGACGGTTACATCATCTACGGTCTGCAGTGAGTGCCATGGTAGAGAGCCACCTCAGCGCCCACCTGTGGAAGAAAATACCTCAAGCGTCAGATCCTCAATCCCACAGTCCCTCGGCCAAGCCTTCAGCTGTTCCTGCCTCTCCTTCCTCCACTTCCCATCATTCCAAGTCTAAGGCAGGAAATCACAGCTCCCCCTCGGTCAAGACTTCCTCGTACTCCTCCCAGGGACCAGGCAAGGAAGCCCACTCACAGAGTTCCTCCACCAGCAAGGCCTACAGTCAGTCTGAGAAGTTTGGGGGCGGCAGCGGCGGCAGCCAGTCGGCGGCGGCTCACTCCAAGCCCACTCGGACAGCCAGCCAGCCTGGGGGTCCGGGGCGGCCCAAGAACCCCGTGGGCCGACCCAGCAAGCAGCAGCTGCGCCTCAGGGATACGGAGCCGGCTGCGTCTGCATCTGCAGCGGCTCCACGAAAGCGGAAAACCTCTCTGAGCGAGGCCGACACGGTCAGCCCGGACAGGAACTGTCTGAGCCCcgatagagaaagagacagggaCAGGGTCCGGACGCCTGTGtccagcaaaacatccccagcaCCCAATCCAGCTTCAGTACCAGACAGACCAATGCCTCCATCTCACGGACAAACCAACGGCTCGCTTTCCCCGGGGAGCAAGCCACCCCGGCCGCAGCTGGGCCCCTCCTCGGCAGAGTCGCCCCACGGCGCCTCGTCGTGGCCATTTAAACGGACTCACACCTCGTCCCCTGACCTGCACGGCCGGGGGGGAAACTCAGGACACCACAGCAGGGTTCCCGGCTTCGAGCACAGAGGCCTGGGGAAGAAGCGTAAAAGCAGCGACTCATCGCCTCCCTCCAAAGCCCACCGGCTACCCACCCCACCTCACGCCGGCTTCTACACCTGGAAAGAAAGCAAAGGGTCGGCACTACCCGTAGGAGGGGAGAAGAAGCTCAGTGCACCGAAGCCAAAACTGCATCGCTGAGCAGGCCAGCCTTCCAAGCCACTAACTGAGGAGCCCTGCAAAACTGTATGGACTGTGGACACGAGACTccaaatgtgtgtatgtgtgtgtgagagactggTGTGTGACTGGTTGTGTCAGAAACTGACAGGCTGGTTGGGAGACGAGTCTGGATGTGTTAGGTCAGTGTGGATgagatttgttttgttatttttctttggCCAATAAATGAATGTCTGTGAGCATGGGAGAGTGTATGACAGAAGATGGGGGAGTGAATTTCTCCGTAAATTCAGAAATACCTCACAATCTACTGGATATGCTGCTAtataaatgttgatttataaaatgaattaaaatattctttataCTTGA

Function

symbol description
atxn7l2 Orthologous to human ATXN7L2 (ataxin 7 like 2).

NR:

description
PREDICTED: ataxin-7-like protein 2

GO: NA

KEGG:

id description
K11318 ATXN7, SCA7; ataxin-7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682391.1 True 2729 mRNA 0.59 11 12574219 12592093

Neighbor

gene id symbol gene type direction distance location
LOC103028365 LOC103028365,LOC108435392,LOC104949255 coding downstream 1132 12566871 ~ 12573087 (-)
ldlrad2 ldlrad2 coding downstream 47640 12518881 ~ 12526579 (-)
chchd4 chchd4,chchd4a,LOC107574929,LOC107718204 coding downstream 61758 12508912 ~ 12512461 (-)
LOC103039006 dnah1 coding downstream 100676 12396596 ~ 12473543 (-)
LOC103042309 LOC108435436,LOC108254777,LOC107677511,LOC104938990,LOC107574463,LOC107715804,LOC107551799 coding downstream 285208 12258794 ~ 12289011 (-)
sypl2 NA coding upstream 2433 12594526 ~ 12612017 (-)
LOC103029205 LOC103029205,LOC108435351,LOC107659543,LOC107715787 coding upstream 70479 12662572 ~ 12666219 (-)
gpr61 gpr61,LOC108434964 coding upstream 81273 12673366 ~ 12687118 (-)
LOC103030591 LOC108435310,LOC108281021,LOC107715788,LOC107659540,LOC107575639 coding upstream 122395 12714488 ~ 12756183 (-)
LOC111195440 NA coding upstream 178642 12770735 ~ 12785185 (-)
G189319 usp48 non-coding downstream 33607 12538250 ~ 12540612 (-)
G189317 usp48 non-coding downstream 40886 12529144 ~ 12533333 (-)
G189316 NA non-coding downstream 45368 12528570 ~ 12528851 (-)
G189315 NA non-coding downstream 55556 12515941 ~ 12518663 (-)
G189159 NA non-coding downstream 245854 12327758 ~ 12328365 (-)
G189344 sort1 non-coding upstream 57218 12649311 ~ 12651090 (-)
G189345 sort1 non-coding upstream 60967 12653060 ~ 12658764 (-)
G189348 rrp9,LOC107659541 non-coding upstream 112175 12704268 ~ 12704712 (-)
G189349 NA non-coding upstream 117580 12709673 ~ 12711013 (-)
G189352 NA non-coding upstream 175917 12768010 ~ 12768711 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other downstream 178687 12298049 ~ 12395532 (-)
eogt eogt,LOC107729408 other downstream 395609 12160542 ~ 12178610 (-)
G189055 NA other downstream 529926 12043913 ~ 12044293 (-)
G188898 NA other downstream 1582825 10990817 ~ 10991394 (-)
LOC111195437 NA other downstream 2617902 9951084 ~ 9956317 (-)
LOC111195455 NA other upstream 20518 12612611 ~ 12714032 (-)
G189335 psma5,LOC107685984 other upstream 22819 12614912 ~ 12619566 (-)
tsen2 NA other upstream 470706 13062799 ~ 13076742 (-)
LOC103024926 dynlrb1,LOC106565026 other upstream 2726550 15318643 ~ 15322175 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other upstream 2817114 15409207 ~ 15466584 (-)

Expression


Co-expression Network