LOC103028365 (LOC103028365,LOC108435392,LOC104949255)


Basic Information

Item Value
gene id LOC103028365
gene name LOC103028365,LOC108435392,LOC104949255
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 12566871 ~ 12573087 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254541.3
attactgaaatgaagtaactttttacggatattaaatttttttgagattcaCCTGTATTTGGCTGTGTGAATAGAGCCTATGAAATCGGACCCCCCTGTTTAGAGTTCTCAGTGGTATCTCCCACCTGACTCCACCCCTCCGCTCCGCTGATAGTGGACTGGTCCGTGacgtttctctgtgtgtgtgtgttttgtttcggTGGGTTTAAAATGTCTCGGGTGTCGCAGAGTTTACTGATCTGTGGGAGCTGAATTTCAGACCGCAGGGCTGTCTGGTGCAGTGCGTGGCTGTGCGGGACAGTGTGTTACGGAGTGTGCGGCTGTAATTCAGCTCAGTAACCGGACTGAAGGAAGAGGAGCGCCGGGAGATTATTGGGACTAACCGGTTTAGCGGGTGGATACAGCGGGGCTGCGGGCGCGCTGCTGTACCGGCAGCCCGGCTCTGAGTCCGCGGGCTTCGGGTCTAGATCGGGAATGGCCCGGGTCTCCCGTTTTTTCCCgagataaacacacagacagcgcgcggcagcagcatcagcagggACGGACGGGATGCGCGCGGATGTGGAGTACAGCCCGGTCGGGGAGGGACTGGGCATGCGCGACTACTGGCTGTACGCGTGCATGCGCAAGGTGGCCGTCGTGGGCGCGCACGGGGTCGCGCTCGGCTTCACCGCGCTCGTGTCCGCGCTCGCGCGACCCGGGACCAGTCTCTTCTCTTGGCACCCTGTCTGCATGTCCTTTGCGTTCTGTCTCTGCATGACTGAAGGGATCCTGCTCTTCTCGGCTGAGGGCAGCCCGCTCTGCTTCAAGTCCCGCAAAGGAAAGATCCGCATGCACTGGATCTTCCAGGCTCTGATGCTGCTGGCCGCCGCCACCGGCCTGGGCTTCATGGTGGCCAGTAAGAACGTATCCGAGCTACCCCACTTAACCTCCTGGCACAGCTTGCTGGGCGTGGCGACCCTGGCGGCTACAGTGCTGCAGGCGGCCTGTGGCGTCTGCCTGCTTTTCCCCAAACTCCTGGGCATCCATTCGGTGCCTCGCCTGCGTCTCTACCACGCCACTTGCGGCCTGGTGGCGTACCTGCTGGCCACCGTCACTGTCATGGGGGCCATGTTTACGGACTGGTTCCAGGCCACTGTGAAGGGAGTCATGTGGTATGGCTtcctgctgctgccgctgtttCCCGCTCTGGTAGTCATGAACCAAATCACTAACGCCTTCCTGCCTAAGAAGAAGCTAACCACGTGAAGAGCTACGGCGGCTCAGGCTGGCTCCATTTAGACTTTCCTTCATATGAATGTGTAAAACGACAGCACTGTAACAGCTAATACTGATGTTAGCATCAAACATTTGGAAGGCACGTACTGTAGCTTTTCTAAACCTTTTAATACTAATGAATGGCTTCATAACATGATAAAGGGAAATTCCAACCATTTCTCACAATTTAGTGGAATTAATTTAACTAAACTACTGACTATTAGGAAAAACATGGACATTGTAGTTCCATTTCCTTTGGGTTTATAGAAATTtagacaaataataaatataccaTGGTGTAACATTCAAGGGCAGCCTGAATGTTCTCTGCTGTCTTAAGATTTAAgactacaaataaataaataaataaataaaggctgcaacatacagcaccagtcagaagtttggacacaccctatCATTCAATGTTATTCTTAATCACaacaattaagagacacatGTGGACTTACGCACTGTATGTCCTCCACAATCACATGACCTGAACCTGaagaactgagatggtgatttaaaatgtacagttttagacattttaagtcgtaattaaatacacttttttcagttgtgtttatttagaTCCCTCATCTCTCAATTCTGTTCAAATAAAGATTGAATATCCATATATTTCAATACAGGCTAAAATACAGGGTTTAATGGATTGTCCTACTTTATTCACCTAATTGTTGCCTATTAAGCTTTTGCCCTATCATGTTAATCCTCtcagtgagattaaagaaagcATGAAACCTTCCACTTCTTAACCTACATATTGTTATAACTGGACAGTTTATCTGATCTCAtgaacactatttttatttaaactaatttaaaaccttTTCCCCCCCTTTCAGCTTCTTTCACATTTGTCGTATTAATTTAGCCAATCATGTCTCTCAGTCTGGTTATGTTTTATGCACTAATGACTACATGATTGTGTTGGTGACAGTTCATTTTGTTGCCTATTTCTTGTATCTCCATGGATTGTGTAATACGGTCACTCAGTCTGCTGAGATTACTACTGGATTAAAAAGGATTTGCTCTGGTGAAATCTCCATTTCCAGTCAACTTCCACTTTCTGCACACTGACCTTTCAGCCTTTCATGTGTCTGAACATatcactgtaaaataaataaataaagaatacatatataaaaa

Function

NR:

description
cytochrome b561 domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254541.3 True 2433 mRNA 0.47 3 12566871 12573087

Neighbor

gene id symbol gene type direction distance location
ldlrad2 ldlrad2 coding downstream 40292 12518881 ~ 12526579 (-)
chchd4 chchd4,chchd4a,LOC107574929,LOC107718204 coding downstream 54410 12508912 ~ 12512461 (-)
LOC103039006 dnah1 coding downstream 93328 12396596 ~ 12473543 (-)
LOC103042309 LOC108435436,LOC108254777,LOC107677511,LOC104938990,LOC107574463,LOC107715804,LOC107551799 coding downstream 277860 12258794 ~ 12289011 (-)
tada3 tada3,tada3l,LOC107656064,LOC106565817 coding downstream 322551 12236886 ~ 12244320 (-)
atxn7l2 atxn7l2 coding upstream 1132 12574219 ~ 12592093 (-)
sypl2 NA coding upstream 21439 12594526 ~ 12612017 (-)
LOC103029205 LOC103029205,LOC108435351,LOC107659543,LOC107715787 coding upstream 89485 12662572 ~ 12666219 (-)
gpr61 gpr61,LOC108434964 coding upstream 100279 12673366 ~ 12687118 (-)
LOC103030591 LOC108435310,LOC108281021,LOC107715788,LOC107659540,LOC107575639 coding upstream 141401 12714488 ~ 12756183 (-)
G189319 usp48 non-coding downstream 26259 12538250 ~ 12540612 (-)
G189317 usp48 non-coding downstream 33538 12529144 ~ 12533333 (-)
G189316 NA non-coding downstream 38020 12528570 ~ 12528851 (-)
G189315 NA non-coding downstream 48208 12515941 ~ 12518663 (-)
G189159 NA non-coding downstream 238506 12327758 ~ 12328365 (-)
G189344 sort1 non-coding upstream 76224 12649311 ~ 12651090 (-)
G189345 sort1 non-coding upstream 79973 12653060 ~ 12658764 (-)
G189348 rrp9,LOC107659541 non-coding upstream 131181 12704268 ~ 12704712 (-)
G189349 NA non-coding upstream 136586 12709673 ~ 12711013 (-)
G189352 NA non-coding upstream 194923 12768010 ~ 12768711 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other downstream 171339 12298049 ~ 12395532 (-)
eogt eogt,LOC107729408 other downstream 388261 12160542 ~ 12178610 (-)
G189055 NA other downstream 522578 12043913 ~ 12044293 (-)
G188898 NA other downstream 1575477 10990817 ~ 10991394 (-)
LOC111195437 NA other downstream 2610554 9951084 ~ 9956317 (-)
LOC111195455 NA other upstream 39524 12612611 ~ 12714032 (-)
G189335 psma5,LOC107685984 other upstream 41825 12614912 ~ 12619566 (-)
tsen2 NA other upstream 489712 13062799 ~ 13076742 (-)
LOC103024926 dynlrb1,LOC106565026 other upstream 2745556 15318643 ~ 15322175 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other upstream 2836120 15409207 ~ 15466584 (-)

Expression


Co-expression Network