RNA id: TU256384


Basic Information

Item Value
RNA id TU256384
length 4311
lncRNA type sense_over
GC content 0.45
exon number 2
gene id mapkapk3
representative False

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 12298049 ~ 12395532 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCACCGGCTGCACTGATCACTAGTGTTAGGACACACAggagctcagtgtgtgtgtggtagggcTGCACGGTAATGACGAATAGAATATTGTGATTTCAATACAtcttgcaataataaaaaacacacagttaaaGACTGGATCATTTTTAGCATCTTGGGATGCTCGTCTGTGATTGGACAGCATGCTGTCAgccagaatttaacaaccagtATTCTTCACCGTAGGTTTACCCTATTCGTTTGATTATAGTGCCACCATGTAAAGTAACAAAGCATTATCTTTAGTAAGTCAGATTGGGGGTTTGATACCATATATTGATAATGTATttcaaaagatacaaaaaaaggtacaatatcaatatttttgaaAGTGAAATTCTTTCACTTATTCATCTGCCATTTTCAGTAGTGTAAAAGTGTCTTTTCAAGCAAAAAGCTTGCCAAAATATGTGTCCTATTCCTAAGAACTGCCTGAATCCTGTTTAGACAGCCTGTAATAACACTTTTAACACTGTAGAAGTTTTAggaccctatcttacaccctgcgcaagaagtgccaataaaaacacaacaagctaaattcataatgttaaaactttattaaattccTTGTTCACGTCTAATGTCCAGTCAGTTATTTTtgggtcccctgtccagtctctggcCTCTTCTCAGGAGCCTTGTACCTGGGTGCTGCCACGGCGTCAGGAGCTGCGTGCACGGTAGCTGCCACGGCGTCAGGAGCTGCATGCACGGTAGCTGCCACGGCGTCAGGAGCTGCATGCACGGTAGCTGCCACGGCGTCAGGAGCTGCATGCACGGTAGCTGCCACGGCGTCAGGAGCTGCGTGCAGTTTTGTCCAGTCCATGTCCTTGTTCACGTCTAATGTTCAGTTCTTTGTcgggtcccctgtccagttcttCTTcaggtcccctgtccagtctccatttGTGTCCTCAGCCTCATTGATTAGATCAAAACCTTTTGGCCAACACTAGCCGATCTCTGGGTGACACAAATTCGTGTATCATCCTCACACCGACTTTGTGACTTGCCAGAATTTGTAAGGCGTTCAGAGCATAGAGCCTGACTTCCTGGGCGGAGTCAAAAGCCAGCTTGGTGAGAGCAGGCAGAATCCTGTTGGTGAACTGTTTCCTGCCAGTCAGTACACTCGATGCTCCCATTACCTGGACCAGCTTCATCAGATGTAAGGAAGCGCTGGTCCTCACGGCACTGTTTTTGTGGCTACATCCTCCAGCCAGCAGAGCTTTCAGGACATGGCCAGGTGAACAGTGTTGCACCATGTAGCTGAGAGCTAGCTCCACTGCCTCCTTAATAAATAGGCTGGGCTCCCCAAATCTGTGCAGGAGCGCGGAAGCTGCAATGTCCAACTCTTTGTCTATGTTCTTCTGCAGGTGAGCAAAGAAATGGGCCAGGGTGGCCATGGCGGCCCGAGAGACCACCAAGCGCAAGCTCTTCACCTTATCGGTGACGGCTATACAAACAATACGCAGCTCTGGCAGCAGAACCTCAGAATGGTGTTCTGCGAGAGCTCGTATCAGCCGTAGTCCCTCTATCTCCTTTTCCCAGTCCTCATCCTGCAGCAGACTAAATGCCTTGCTGAGTTTCTTCTTGGGCTTGTCGAGGGGCTCCTCACTGGTCAGAGCTGGTAGTTCCAGTGGTTGGCCACCTTCGTGCTGCTTCTCAGCATCGCGTTTCTTGCAGGTAGCCACCTCTGCCTCCACTGGCTTCTGCTGTTTCTGCCTATCTAGGCGAGGTATCTTGCTACCTGGTGAGGTGTAGTAGGCCGATtgtttcttctcctcctctgctGACTGGGTAGGGAAGGGTCTTGAACAGAACTCCTGGTATGAGAATGAGGGCCCAAATTGCCCGTCCCCACAAGGAGACTGAACTTTCACATTCAGTCTGCGGAATCTGCTGCTGGTTTTGTCTGCAGCAGGTTTTGGTGGTGGGACGGGGGTGTGGAGAACAGGAAACTTAACAGCCTCCTGTTTCACCACAACCTTTGGGGCTTGAACTTTGCGTGGCACACTCTTCTTTAATGGAGGCAATTTAAGGGATGGTGCAGGTTGTTGAACAGGCTTCTTCTCGAGAGTGCTGGTTGAAATGTTGGCCAAGATGCGCAATTGTTGAAGACACTCCTTGTGCCTCTTTCTAATCCTCTCTATGACAGAATGAGCGACACAAAAGGGCCCATCGTCCTTTTCATCGCAGAGAAGGTCCACCATCCTGTTACAATCAATTTCACAGAACTCCCCAAATAATAATGTGGACCAGTAGTCCTCCTTCTCACGAGCAGCATGAATGTCCGCTTTCGATGGTTTTGGAGGCTCAACAGCCTCCTGTTCCAAGGCAACCTGTGGGGCTTGAACATTGCATGGTACACTTTGCCTTATTGGAGACAATCTATTGGGTGGTGCACGCAATTGTTCAAGACACCCCATGTACTTCTCTTTAATCTTCTCTAGAACTCTATGCACAATAATAAAGGGCACTTCGTCCTCACTGTAGTCAGATTCTATCATCTCTCTATAATCAATAGACCTCTCTCTCTTAGATGCTTTCTCCACAGCAGTCGCACAGTCCTTTTATAGCCTGGTGTGATGATGTCATCACAATTCTAGACAAAGTTCCGTTGATGACATCACTGCACAGATGAGGCCCAACATTCCGTCTcacacaccagcagcagcacggAACCCTTTCTCTCCCCTGCTCTGCCCTGTCACCTCCAGAACTTAACAGTTTAATACACTTTGTATTGTATTGAGTTTTTATGTAGGGAAAATAAAATTTGTATTATGTTCTAAAGGGCCATGCTGAGACCTTTGGAAGGGCTGGTGCTCAAAGTCAAAAGGGGGAAAATCGAGCACGAATTTAAAAACACCATACAGAAACACATCTTACAACTTAAAATTATAAGCGGTTGATTTGTGGTCTTACTGAGgtgttactgtaaactacaaatgaacagaagtcacgttagatcagtgtttctcatcCCTGTTCCTtaatattcccactgttctgcatattctacagctttctctgctttaaaggcacttaataaaataaatggtgGTATgttgtgtctaatacactgcaggatttacataatgattgatttatgatcCTTTTGGggctaaaacattttaacaggtaaactcaataaaggattgttaattagctgatcagtttaatcaggtggaaaacacaattttagggcagtgaCCAGGGTTAAGTTACTGccttaaactaccaacattacccagtgttgtactaaattcttGCTATCCTCTACAGTACAgggcaaaagtttgaacacaccttctctttttcaatgcgtttttttattttcatgactatttccattgtagattctcactgaaggcatcaaaactatgaatgaacacgtggagttttatgtacttaacaaaaaaggtaaaatgacttaaaaaaaaaacccatctggattgggttcaggtccggtggctgtggaggccaggtcattttttttgttaagtacataaaactccacatgtgttcattcatagttgtCAAGCCTTcaagaatctacaatgtaaatagtcctgaaaataaagaaaactcattgaatgagaaggtgtgtccaaacttttggcctgtactgtacatctggcttctagcaAACTAGTAAGCTAAATGGATTGTAgttcattatagcttacagtaagtcctgcaatcctaaattattGAAcccaattaaaaaattaaatattgggGGGTGTGGACATTGGCTTTCCCATTCACACAGCGGCCTGTTTCCtgattaatactgtttttttatatatataatacgggaaatttacgggaaaatacttaTATGTTAAGATGGCGagaaagaggggtaaaatacggtagtttcccgtcCAAAACGGGTATGACTTTCACTCATAgacttacaaaaataaaataaaaattgacaaaaggTCACTTTGGGCAGTAAGAGCCAAAGGGGCAGGTGCTCCAGCCCCCTCCGCCCCCCCTCCTCTGCACGTGCCTGATCTTCTAAGTTGGCAGACTAATCAGCGCCACCTTGTGACAGTTCTTTACACATATTCATGTTGTAGTTGGATCTTGTTGTATATATTGCGGCGGTACAGAGAACGTTTTGGAGATACTAATCTGTAGCACACTGCCAGCCAGCCTACAGCATCCTGCACTCAGCCTTTAGCCTTCCTCCACActgcctcctcttcctcctcctctcctcccaaCAGAGGAACGCCTAGAACTTTCACCTCAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256279 lncRNA downstream 68981 12221290 ~ 12229525 (-) True G189085
TU256290 lncRNA downstream 133308 12160542 ~ 12165198 (-) True eogt
TU256228 lncRNA downstream 257651 12040575 ~ 12040855 (-) True G189054
TU256227 lncRNA downstream 259418 12038777 ~ 12039088 (-) True G189053
TU256226 lncRNA downstream 289448 12008843 ~ 12009058 (-) True G189052
TU256601 lncRNA upstream 170559 12515941 ~ 12518663 (-) True G189315
TU256602 lncRNA upstream 170559 12515941 ~ 12516724 (-) False G189315
TU256603 lncRNA upstream 183188 12528570 ~ 12528851 (-) True G189316
TU256605 lncRNA upstream 183762 12529144 ~ 12533333 (-) True G189317
TU256606 lncRNA upstream 184082 12529464 ~ 12533333 (-) False G189317
XM_022682382.1 mRNA downstream 9495 12262370 ~ 12289011 (-) False LOC103042309
XM_007256421.3 mRNA downstream 21948 12258794 ~ 12276558 (-) True LOC103042309
XM_007256422.3 mRNA downstream 21948 12262370 ~ 12276558 (-) False LOC103042309
XM_022682380.1 mRNA downstream 54186 12236886 ~ 12244320 (-) False tada3
XM_022682384.1 mRNA upstream 51214 12396596 ~ 12473543 (-) True LOC103039006
XM_007254536.3 mRNA upstream 163530 12508912 ~ 12512461 (-) True chchd4
XM_007254537.3 mRNA upstream 173499 12518881 ~ 12526579 (-) True ldlrad2
XM_007254541.3 mRNA upstream 221489 12566871 ~ 12573087 (-) True LOC103028365
XM_022682391.1 mRNA upstream 228837 12574219 ~ 12592093 (-) True atxn7l2
TU256229 other downstream 254213 12043913 ~ 12044293 (-) True G189055
TU256039 other downstream 1307112 10990817 ~ 10991394 (-) True G188898
TU255454 other downstream 2343699 9951985 ~ 9954807 (-) False LOC111195437
TU254880 other downstream 4907480 7388397 ~ 7391026 (-) True G187946
TU254657 other downstream 5315666 6978824 ~ 6982840 (-) False LOC111195363
TU256647 other upstream 269530 12614912 ~ 12619566 (-) True G189335
XR_002651608.1 other upstream 717553 13062935 ~ 13076516 (-) False tsen2
TU257791 other upstream 2973262 15318644 ~ 15322171 (-) False LOC103024926
TU257808 other upstream 3086285 15431667 ~ 15457265 (-) False LOC103026676
TU258141 other upstream 4057409 16402791 ~ 16460928 (-) True G190405

Expression Profile