foxf2b (foxf2b,LOC107721287,LOC107659210,LOC107555773,LOC107711627,LOC107665339,LOC107556145)


Basic Information

Item Value
gene id foxf2b
gene name foxf2b,LOC107721287,LOC107659210,LOC107555773,LOC107711627,LOC107665339,LOC107556145
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 13837304 ~ 13839876 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218803.1
CTGCACGAACTCAGTCTTTCCATTTCTTCCTCAAAAACGGACTACAGCCGCCTGGATCAGAACGGAGCTCGTGGCAGAAAGGGAACCGTCTCGACGCGTTAATAAGGACCACGATTACGCACGTTGCTTGGATATTTTCCCTAACCAAAAACTGGATTTTGACTACAACCTTAAACCCAGAAAAAGAAGAGCGCCGAGTCTGCATAGGATGTCTTGTTAAATCAGCGGCGTTTATTTTCGGAACCTGCTTTTTCCCCCCGAACATCGCGAATATCTCAGTCTTTGGGGCTCTGCTTAGGCGTTTTCTTCTGTCAACGTCAACGTCTGTCGGCCAGTTGTGTTCGTACGTCAGCGCGGGACAGATGACGACCGAGAGCCCCCACGGACCGCCGCGCTCGACGCCCCCGATCAGGACCAGTCCGGCGTCCAACGCGCTGCATCCGGGACTGATGAACTCGACAGGTAGCTTGGAGGACCACGGCGCAGTGTCCAAGACTAAAAAGACCAACTCGGGACTGCGACGCCCGGAGAAACCGCCCTACTCGTACATCGCACTCATCGTGATGGCCATTCAGAGCGCACCGACAAAGCGCCTCACGCTGAGCGAGATCTACCAATTCCTGCAAACGCGCTTCCCCTTTTTCCGAGGCTCGTACCAGGGCTGGAAAAACTCTGTTCGGCACAACTTGTCTCTGAACGAGTGCTTCATTAAACTACCGAAAGGTCTCGGGCGGCCGGGGAAGGGGCATTACTGGACTATAGACCCCACCAGCGAGTTTATGTTCGAGGAAGGGTCGTTTCGGCGAAGACCGCGAGGATTTAGGAGGAAATGTCAGGCCATGAAACCCATGTACAGAATGATGAACGGCCTAGGGTTCGGTTCCGCCATTTTACCCCAGAGCTTCGATTACCAACCTCCCGCGGGCGCACTCGCGTGCCACGGCACTGGCTACAACCTGGACCTGTCCGGTAATGGTTACGATTCAATAAACAGCGGGCACCACGGCCACATGTCCCCCAGCTCGAGACACGGTTACATGGCAAGCTGTCCAGTGCCTGGCAACGGAGACTACGGCGCCGAGAACAACACCAGTCCGGTCTCGTCTTCCCCTGCAATAGCTGGGGCGCTTGAGGGCCACTCGCCGTATTCAGAGGGAGCAGCGCTATGGGCCTCTTCTTCTAATTCTCCGTACCTAAAACAGCAGACTACGGTCTCGAGCAATTCGCCGTCCGCGGGGCAGCATCCGGGCATATTCACCTACTCCCTGGAGCAGGGTTACATACAGCCGGGTGCGAGAGACAACACGGACATGTCAGTTGGTATATCGCGCTACCCGACACATTCGTCCCCAGTCGGAGAACGGAAGGACTTCATGTTGAATTTTAACGGAATAAGCTCTTTCCACCCGTCCGCTGGGGGATACtaccatcaccatcatcatcaccatcaccaccatcaGAGCGTGCATCAAGACGTCAAACCTTGCGTGATGTAGTGCGCTTGACGCGGAGCGAGTCGCACAAAGATAAGCACTTGGAGAGCTGTGAGGTAAAGAGACTGAATGAAGGATTGATGACCGTGCACTCACGAGATGCGTGGAAAGAGACGGACTTGTGCTGCTTACATTTCAATAGAGTTTGAATTAAGCACATATAAGTATATTTCACTTAATCTGTACAGTGCAATGATGTtagcaataaaacatttcaaaggaaA

Function

symbol description
foxf2b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within pericyte cell differentiation and vascular associated smooth muscle cell development. Predicted to be active in nucleus. Is expressed in head mesenchyme; pharyngeal arch 1; and pharyngeal arch 2. Orthologous to human FOXF2 (forkhead box F2).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: forkhead box protein F2

GO:

id name namespace
GO:0009888 tissue development biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0007389 pattern specification process biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0051090 regulation of DNA-binding transcription factor activity biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008134 transcription factor binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0008301 DNA binding, bending molecular_function

KEGG:

id description
K09399 FOXF; forkhead box protein F

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218803.1 True 1717 mRNA 0.53 2 13837304 13839876

Neighbor

gene id symbol gene type direction distance location
foxq1b foxq1b,LOC107659165,LOC107721275,LOC107711626,LOC107665328,LOC107555749,LOC107556144 coding upstream 5236 13830556 ~ 13832068 (+)
irf4b irf4b,LOC107555743,LOC107721284,LOC107659166,LOC107711625,LOC107665387 coding upstream 59222 13773152 ~ 13778082 (+)
stx11b.1 stx11b.1,LOC107577280,LOC107659168,LOC107556142,LOC107711624,LOC107665418 coding upstream 69476 13765617 ~ 13767828 (+)
zbtb2b zbtb2b,LOC107721350,LOC107556169,LOC107711638,LOC107665357,LOC107555769,LOC107659215 coding upstream 137440 13691382 ~ 13699864 (+)
nrbp1 nrbp1,LOC107665360,LOC107659221,LOC107737320 coding upstream 298792 13526449 ~ 13538512 (+)
foxc1b foxc1b,foxc1,LOC107556146,LOC107555772,LOC107721387,LOC107711628 coding downstream 5413 13845289 ~ 13847239 (+)
serpinb1 serpinb1,LOC107659205,LOC107721344,LOC107555778,LOC107665390,LOC107711644,LOC107602456 coding downstream 98245 13938121 ~ 13941704 (+)
LOC122325093 LOC107659203,LOC107721343,LOC107555777,LOC107721341,LOC107721342 coding downstream 102630 13942506 ~ 13944676 (+)
LOC122325489 LOC107721341,LOC107659203,LOC107721343,LOC107555777,LOC107721342,LOC107665391,LOC107602432 coding downstream 114553 13954429 ~ 13962801 (+)
cdca4 LOC107659199,LOC107583853,LOC107721337,LOC107602390 coding downstream 142083 13981959 ~ 13987578 (+)
G138322 NA non-coding upstream 52556 13783498 ~ 13784748 (+)
G138244 armt1,LOC107721382,LOC107555770,LOC107556129,LOC107737326 non-coding upstream 150574 13682385 ~ 13686730 (+)
LOC122325034 NA non-coding upstream 161877 13674163 ~ 13675427 (+)
G138103 LOC107721365,LOC107683924,LOC107555745,LOC107737306,LOC107556155,LOC107665310 non-coding upstream 431435 13404566 ~ 13405869 (+)
G138081 NA non-coding upstream 476817 13349160 ~ 13360487 (+)
G138380 NA non-coding downstream 105367 13945243 ~ 13945743 (+)
G138372 NA non-coding downstream 222188 14062064 ~ 14089796 (+)
LOC122324590 NA non-coding downstream 581625 14421501 ~ 14422765 (+)
G138484 NA non-coding downstream 587083 14426959 ~ 14428282 (+)
G138488 LOC107555768,LOC107737325,LOC107556167 non-coding downstream 598937 14438813 ~ 14445001 (+)
syne1a LOC107737324,LOC107665323,LOC107556168,LOC107659217,LOC107555741 other upstream 166029 13571846 ~ 13671275 (+)
cep135 cep135 other upstream 375601 13446610 ~ 13461703 (+)
aasdh aasdh other upstream 402791 13416680 ~ 13434513 (+)
LOC122325384 cyp2p7,cyp2p10,cyp2p8,LOC107556152,LOC107737305,LOC107665313,LOC107556153 other upstream 449654 13384365 ~ 13387650 (+)
LOC122324921 LOC107601942,LOC107755262,LOC107683940,LOC107665389,LOC107739375 other upstream 1809004 12026309 ~ 12028300 (+)
tmem251 tmem251 other downstream 212093 14051969 ~ 14054833 (+)
si:dkey-85n7.8 si:dkey-85n7.8,LOC107602311 other downstream 268417 14108293 ~ 14109604 (+)
prima1 si:dkey-85n7.6,LOC107602279,LOC107659191,LOC107583807,LOC108424448,LOC103041400 other downstream 286139 14126015 ~ 14147913 (+)
LOC122324585 kif26aa,LOC107721264,LOC107602192,LOC107711661,LOC107668200,LOC107569886,LOC107659150 other downstream 370146 14210022 ~ 14270338 (+)
slc10a1 slc10a1,LOC107668231,LOC107671779,LOC107756602,LOC107721315 other downstream 1163534 15003410 ~ 15015372 (+)

Expression


Co-expression Network