ttc1 (LOC107733523,LOC107673829,LOC107715419,LOC107684704,LOC107557068)


Basic Information

Item Value
gene id ttc1
gene name LOC107733523,LOC107673829,LOC107715419,LOC107684704,LOC107557068
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 10747980 ~ 10754679 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220986.1
TCTACCCTTGCGTCACGCAGTGAGTGATTAACCGGAAGAGACGTTATGGCTCATTTCTAGAAGGCGAGGAACAGGTTGTGGTGAAAGCGCAACTCCAGATGGAGATAGAGTCTGAGACGCTCTCAGCTGCCATGGCTGACACCTTAAAAGTGTCAGAGACCAGAGAAACCACCACAGACCCCGAGGAAGACCGTTTCTATGACTGTGAGGACATGTTACCTGAAGAAGAtggacacacagagagagagcacagaGAGCTGGTGTCAGACGACAGGACAGAAAATGAGAAACTAGAAAACGTGGATGGCACTGACCGGTTGTGTTTGGATAACACGTCAGAAGAGGATTCTGAAGGGCACGCGGACAGCTCGGAAAAGAGACACGACTCATTAACAACAGACCTGGATCCCGAGAAAGACAATGACGAGGAACAGGAGAAATGGGAGAAGTTTGTGGAGAGCGACGAGCAGAGAGAGGGCGACTCGGATTCAGAATTCAAAGAGGAGGCGGTCAAGGAGAACGAGTTTGATGAGGAATACCTGCGTGAGCTGGAGAAAGACCTGAcggaggaagagaaagagaGCAGAAGAAAGGAGAGTTTACAGCTGAAGGAGAAGGGCAACACACAATTTAAGAgtggagAGCATGCCGAGGCTGAAGAGTCTTACACGTCCGCTCTGAAAGTGTGTCCTGTGTGCTTCGGTAAAGAGAGATCCATACTCTTCTCTAATCGAGCTGCTGCACGCCTGCATCAGGATAAAAAAGACAGCGCTATTAGTGACTGCTCTAAAGCCATAGAACTAAATCCAAATTATGTCCGTGCCATTCTGAGGAGAGCAGAACTCTACGAGAAGACAGACAAGCTTGATGAAGCTCTAGAGGACTATAAAAGTGTGTTGGAGAAAGACCCGGGCATCCCTGCAGCTAGAGAGGCCTGTATGCGATTGCCACGGCAAATCGAGGAGCGAAACGAGAAGCTGAAAGAAGAGATGATGAGTAAGCTGAAGGACTTGGGCAACATGATTCTGCGACCCTTCGGTCTCTCCACCTCCAACTTCCAGGTCAACCAAGACACCAACACAGGATCCTACTCCATTAATTTTGTTCAGAatcccaacaacaacaacagatagCTACTCCGGGTGTCTTTTTATAGAGTGTGAACTTCCCCATTCAAGTGtcactctcactctctgacTATTCAGTCGTATGCACTAATTCAttaatacaagtaaaaaaagCTGGTTTTTCATCGACCGATAGAATTATCCGCTCATGTCAAGTGGTTTTTGGGGAACTTGTAAGCCTGTGTTATATAGATATTCAGTGTTTTGGCATGCCGGGATGTTACATTTGCTGTGAAGCTGGTGTCAGTGATCCAGACTGTTGATCACGAGCAATGACATAATGGGCATTCATCACCATTACCTGCGTTCACATTAAACCAGCGGATAAGATCCTA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K24926 TTC1; tetratricopeptide repeat protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220986.1 True 1462 mRNA 0.47 8 10747980 10754679

Neighbor

gene id symbol gene type direction distance location
fabp6 fabp6,LOC107715418,LOC107590112,LOC107733520,LOC107684737,LOC107557041,LOC107673806 coding downstream 13399 10733022 ~ 10734581 (-)
brd8a si:ch211-59d17.3,LOC107715413,LOC107684709,LOC107693663,LOC107590085 coding downstream 71180 10664918 ~ 10676800 (-)
cxxc5a cxxc5a,LOC107684712,LOC107557061,LOC107715411,LOC107733522 coding downstream 152892 10573223 ~ 10595088 (-)
nrg2a nrg2a,LOC107733500,LOC107560662,LOC107684713,LOC107557058,LOC107693753 coding downstream 238948 10428945 ~ 10509032 (-)
epdl2 LOC107693738,LOC107733485,LOC107557054,LOC107715406,LOC107560654 coding downstream 327502 10417022 ~ 10420478 (-)
adra1ba adra1ba,LOC107673805,LOC107733492,LOC107590113,LOC107715309,LOC107684736,LOC107557042 coding upstream 2639 10757318 ~ 10765782 (-)
fam53c fam53c,LOC107733521,LOC107590031,LOC107715420,LOC107557069,LOC107684702,LOC107673830,LOC108428012,LOC105011285 coding upstream 57627 10812306 ~ 10821920 (-)
slbp2 slbp2,LOC107733486,LOC107715421,LOC107557071,LOC107673831 coding upstream 67697 10822376 ~ 10824672 (-)
nhp2 nhp2,LOC107684699,LOC107715316,LOC107590037,LOC107673822,LOC107733502,LOC107557075 coding upstream 103816 10858495 ~ 10859757 (-)
grpel2 grpel2,LOC107590036,LOC107673820,LOC107715318,LOC107684698,LOC107557074 coding upstream 105117 10859796 ~ 10865109 (-)
G145483 NA non-coding downstream 12088 10734957 ~ 10735892 (-)
G145480 NA non-coding downstream 17583 10730079 ~ 10730397 (-)
LOC122326789 NA non-coding downstream 139561 10604026 ~ 10608419 (-)
LOC122326093 NA non-coding downstream 334380 10411101 ~ 10413600 (-)
G145412 slc22a6l,LOC107693926,LOC107560655,LOC107733489,LOC107715266,LOC107684719,LOC107736771 non-coding downstream 336644 10403122 ~ 10411336 (-)
G145530 NA non-coding upstream 34191 10788870 ~ 10791881 (-)
G145540 NA non-coding upstream 70169 10824848 ~ 10825130 (-)
G145527 NA non-coding upstream 73096 10827775 ~ 10829526 (-)
G145549 NA non-coding upstream 130665 10885344 ~ 10891152 (-)
G145559 NA non-coding upstream 168754 10923433 ~ 10927487 (-)
prob1 LOC107673843,LOC107590111,LOC107733495,LOC107715308,LOC107557040 other downstream 30820 10711570 ~ 10717160 (-)
LOC122326060 gria3,LOC107548214,LOC107559424,LOC107700029,LOC107715357,LOC107669376,LOC107568987,LOC106603380 other downstream 615145 10107731 ~ 10132835 (-)
aipl1 aipl1,LOC107664920,LOC107585578,LOC107743670 other downstream 737053 9882417 ~ 10010927 (-)
LOC122326415 LOC107669356,LOC107693781,LOC107715400,LOC107723876,LOC107560657 other downstream 1508084 9220690 ~ 9239896 (-)
G145046 LOC107560672,LOC107693791,LOC107723867,LOC107715395 other downstream 1531390 9210651 ~ 9216590 (-)
LOC122326213 NA other upstream 99987 10854666 ~ 10857428 (-)
si:dkey-22f5.9 si:dkey-22f5.9 other upstream 156551 10911230 ~ 10948368 (-)
LOC122326065 clk4b,LOC107673840,LOC107756806,LOC107667599,LOC107570696,LOC107749918 other upstream 1052145 11806824 ~ 11812583 (-)
cnot6a cnot6a,LOC107756798,LOC107689185,LOC107590062,LOC107566218,LOC107749911,LOC108441023,LOC107667594 other upstream 1217537 11972216 ~ 11985072 (-)
rgs14b LOC107721394,LOC107590127,LOC107689186,LOC107748103,LOC107588771 other upstream 1257532 12012211 ~ 12057607 (-)

Expression


Co-expression Network