ptpra (ptpra,LOC107736890,LOC107737868)


Basic Information

Item Value
gene id ptpra
gene name ptpra,LOC107736890,LOC107737868
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 2802146 ~ 2826909 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043221448.1
GCAGGGGCACAACATGGCGGATTAGGAGGCGAGCGACGCGCCCGGATACAACGAACAAATTGTGGGATACCGATTCCCCGTGTCGCTGAGAAGGCAGGACTGTAGGCTTTTCGGAAAGCTAACGCACACCTTCAAGGCTTCCCGAGACATGCATTTCGGATACCAGTAAGCGCCTTCGTTGCTTTGCCCCACTCCAAATTGGCTGTCTGTCCGAGATCATTCCTATCACCCAGGCCCCCCACCCCGAACACACTCTCGGTTCCTGGGGTGTGGAGACAGGGGCCGGGGAAGTGGAAAACAATCGCACTTTATCGGGAACATCAGGCTCCGTGGCGCGGGACGGGGCTGTCAAGGAGATCATTGTGCGAATGAGTGAGTGATGCAGGTTTCGTTTCTCCAGGGCAGTATGGGTGTGTATCCCCTGCTCCTGCTACTCCACGTGGCCTTTGTGGCCCTCAGCACGGCCCAGACACTCCCTGACCCAGgtgcAGTCCTGACCGCCAAACCTACATACCATCCTCCCACATCACCCTCTATAGTCACCCAAGCACCCCCATCGTCCACTGCATCTTCAGCACCGTCCCCTGAACTTGTTGTAACAACAGGACTCAATAACTCTACGGGCGCGGTGACCCCCGAGGTTCCCACAGCCCCTCCGGTCGTCTCCCCTCCGACTGTGCCCTCCCCTACAGAGGCACCAGGCGCGCCCCCGACCCCATCCGCTGCACCCCCGTCCCTCACCACCCTCAAAACCGGAGACGGCGAGACTACAGTTTTGGCTACGGCAGAGCTCCCTACGCCTGATTCGACGCCCACCCGGTCCACTTCAGAGCCGGAGACGGAGAATCCAACTTCCCCTACAGACGCCACCACAGCTGACATCAGCAAGCCTCCAGGCGATGGTGGGCAAGATGACACAGCGATCATGGCGGTGGTGGTTGCCCTGTCCTCTCTGCTGGTGATTGCCTTTATCGTCATCGTCCTGTACATGCTCAGGTTTAAGAAGTACAAGCAGGCAGGGAGCCACTCCAATTCCTTCCGCCTGACCAATGGCAGAGCTGACGACACAGAACTTCAGAGTGTGCCGCTATTGGCCCGCTCTCCTAGTACCAACAGGAAGTACCCGCCCCTTCCTGTCGACAAGCTGGAGGAGGAAATGAACCGCCGAATGGCAGATGACAATAAACTCTTCCGGGAAGAATTCAACGCACTGCCTGTATGCCCCATTCAGGCCTCATGTGATGCTGCCTCGAAGGAGGAGAATAAGGAGAAGAACAGATATGTCAACATCCTGCCCTATGATCATTCTAGGGTGCATTTGACTCCTTTGGAGGGAGTTCCTGACTCAGACTACATCAACGCTTCCTACATTAATGGATACCAGgagaaaaacaaatttattgCTGCACAAGgacCAAAAGAGGAAACGGTCAATGACTTCTGGAGGATGATCTGGGAGCAAAACACTGCCACCATCGTCATGGTAACCaatctgaaagagagaaaagagTGTAAATGTGCTCAGTACTGGCCCGACCAGGGATGCTGGACCTACGGAAATATCCGCGTGTCAGTGGAGGACATGATGGTTCTGGTTGACTATACCATCCGCAAGTTCTGCATTCAGCAGGTTGGCGATGTGTCTGGTAAGAAGCCTCAGAGGCTGGTCACACAGTTTCACTTCACCAGCTGGCCTGATTTCGGGGTTCCTTTCACTCCCATTGGTATGCTGAAGTTCCTTAAGAAGGTCAAGACCTGCAACCCACAGTATGCTGGACCCATAGTGGTTCACTGCAGTGCGGGTGTTGGCAGGACAGGGACCTTCATCGTGATAGATGCTATGCTGGACATGATGGGGGCAGAGAGAAAGGTTGACGTCTTTGGATTTGTCACACGCATCAGAGCCCAGCGCTGTCAGATGGTCCAGACTGATATGCAGTATGTGTTTATATTCCAAGCTTTGCTAGAGCACTACCTGTACGGGGACACGGAGTTAGAAGTGACGTCTCTGGAGTCTCACCTGAATAAGCTGTACGCTCCTTTACCTGGAGCCGGCTGTGGAGGCCTGGAGGCAGAGTTTAAGaAACTTACCTCCATTAAAATCCAGAATGACAAGATGAGAACAGGGAACCTGCCTGCCAACATGAAGAAAAATCGTGTTTTGCAAATCATTCCATATGAGTTTAACAGAGTGATCATCCCTGTAAAACGAGGGGAGGAGAACACGGACTACATCAACGCCTCTTTTATAGATGGTTATAGGCAAAAGGACTCGTACATGGCATGTCAGGGCCCGCTGCAGCACACCATTGAGGACTTCTGGAGAATGATCTGGGAATGGAGAAGCTGCTCTATCGTTATGCTGACCGAGCTGGAGGAGAGAGGACAGGAGAAGTGTGCTCAGTATTGGCCTAGTGACGGTGTGATGGTTTGTGGAGACATGTCCATTGAGTTGAAGAGGGAGGAGGAAAGTGAAAGCTACACTGTTAGGGACCTTCTCGTCACCAATAACAGAGAAAATAAGTCTCGCGCTGTGAGGCTGTTTCATTTCCACGGCTGGCCAGAGGTGGGCATCCCGTCTGATGGGAAGGGTATGATCAACATCATCGCTGCAGTTcagaaacagcagcagcagtctGGAAACCACCCAATCACTGTGCACTGCAGTGCCGGAGCAGGGCGCACAGGGACATTCTGTGCTCTGAGCACGGTCCTGGAGAGGGTGAAGGCCGAGGGCATTCTGGACGTTTTTCAGACGGTGAAGAGTCTAAGACTACAGAGACCGCACATGGTGCAGACACTGGAGCAGTACGAGTTCTGCTACAAAGTGGTCCAGGAATACATCGATGCCTTCTCTGACTACGCCAACTTCAAATAAAGCCACAGCCACCTGCGGAAGATCGGACAGACTTTCCCAGTCATGCACTCACGTCCACACTTtcacaaaaaaccaaaaaacaccgCTAAACGAGACGGACTGCCAGCGCAAAGCAAAAGGGAATGAAAATCCTTTGGCCGGCAAGCACGTGAATACGTTGGTGCTGGAGacggaaagaaaacaaacaaagaaaacaccATTAGAGATGCCTTcttgaatattttgtaatattgctCTTGTTAATAAGGCCCTTACCCATTTCTCTCAGTGTAAATATGctcttgtatttttttgttttgttttgtttcatttgtttggttttagaAGCCATTCTGTTGCGGTTTTTAGAGTGACCTTAATATAGTTTACtggtatataaatgcatatatgaaTGGCGCTGTAGAGACAGAGCGGTAGCAAGATGAGGGTGCTTTTCACTGGGTGTTTTAACAAGAACTTCCTTCTTTCTCTGCAGTTGAGTGACTGAAACGTATTTGAATGGCAGCTCGATCCCACTATGCTGTTTCCCGTAGCTACATAACGCACAACACGGCAAAGTCAACCCGCCGCGGTGCATCAGCGACTGAAAACGCTTCACTGTGCTTTTTCGATTGTGTTTACTGGAGTGACAGATATATTTTGGGGATTTTTGAGACAAACCAGGAAACCCTGAGTGTGTCGAGACCCGAGAAATTCCACTTCGTTTTtctttcgtgtttttttttttttttttatccccttTCGAATCTCGCAAGGGTTTGCTTCAAGTGTCATTCCACGCCTAAAAAACCTTTTCTTCTCAAGATCTCTCTGAAAGCACCTTGCGTACTTGTGATTTATAATCAAGGAAGTGATGCATTTACTTGCCCCCGGATGTCTGATAATTGGCCTTAACAGCTGTGCTTGACGCTGCGGTGTCATAACGTGCTTTCCTTCGTTCAACAATAAAATGATCTAGAAAGATCTAATAGAAATGATTCTGTTCCTGCCCGTGTAAAGGACTTCATCCGTTGCGCTGAAGTCGACGAGCCCTTTTCAGCTCCACTGAGCCAGTTAGATTGACACGTGATGCTTCGGCCCACAGCGGTGAACACTTTTAACTTCTCCGAGCATAAAGACCAGGTAGACGGTAAAAATGAGGGCCTGTATTGTCAAGTTATTTTCCGTCAAACGTTTTATGTAGTTTAAGCCCTCGTTCCGCACCGCCTTGCGTCAGGAAAATGTTTTACGAAACGTGCGTAAACCCAATAGGCGTCGTTTTAAAATCACTCACCCATCTGTCGTTCCATGTTAACGGGGTTCTCGACGGAAACCGTTATTATTTCAAGATCCATGATGTTCTGAATGATGGATTCCTATCGCAGCTTCATCTCGAGGTGTTCCACGAAACGCTGACGGATTTGCTCGAGTGTTGTGCGAGTCGACTGTTGTGATTTACTTAAAGTCACACTAACCCTTTCCACGTGAGACACTGTGCCAATAGCAGCCTCTCAGGGGCAGGATCCTTCTTCAGAGGTGGGAAAGTGCCTCATCACGTTCCTGTAGCTTCAAGCGTATTTCCCGCCTGCTCTTTTGTAGCCCGTGTTCCCCCCAATCCGTTGGGACATTGTGGCCTGTACGGCGTATGATAATCTGTAATGGAACCCAAACGGTCGCTTTTCTGTGTCTTTGGTGTattttatgaacttttttttttttccttcttggCTTACGTACCGTTTAAAGCCATCCTGGAGGGAGCACCAGACTTCAGGACAAGTCCCTCAAAACCCAAGCTCTTAATGTAAGCGGAGCAATCTAGTTCTTCTGGTCAAGAAGGGAAGCCACGTGTCTGGAGGCTTATTCAATCTTCTGCTGAATGTGACACTGAGACGGCCTGCTTGGAGAAGTGAAAGGACAAAGACCGCTCTCCAGACAACCCCTGAAAATCGATTTTATCTGAAACATCCCTTCAATTGGATTGTTTCTAAAATTCCagaaatcttaaaaatgctACCCtttctgatttttcttttctgtttatgCACCCTTCTTGTACATAATGTAaggttatttatatttcattcctATCTGTTgccttgcttttattttattcttatctttcactcgttttttttttttttttttaagatacttGTATATTAAACTGTACTGGGaccattttgaaatgtattagtttttttttttttcctgtttttaattcGGTATTGtcttaaaatcttattttttaatttacctgtttttttctagtgttttgttattcaaatttgaatatatatgtatatataattatatatatgatgcaaattatatataattatataatgctGAACGGCCTTTCTAAACAAGATACTGTTCAAACCTAATAAAAGTGCTTGAGATTTTA

Function

symbol description
ptpra Predicted to enable protein tyrosine phosphatase activity. Acts upstream of or within convergent extension involved in gastrulation; regulation of protein kinase activity; and retina development in camera-type eye. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in blastomere; head; nervous system; and pectoral fin. Orthologous to human PTPRA (protein tyrosine phosphatase receptor type A).

NR:

description
PREDICTED: receptor-type tyrosine-protein phosphatase alpha

GO:

id name namespace
GO:0045859 regulation of protein kinase activity biological_process
GO:0006470 protein dephosphorylation biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K18032 PTPRA; receptor-type tyrosine-protein phosphatase A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043221448.1 True 5264 mRNA 0.48 23 2802146 2826909

Neighbor

gene id symbol gene type direction distance location
idh3b idh3b,LOC107737870,LOC107736889,LOC107548787 coding upstream 1646 2793688 ~ 2800500 (+)
p2rx4a p2rx4,p2rx4a,LOC107737869 coding upstream 8601 2789507 ~ 2793545 (+)
gstt1b LOC107548781,LOC107661340,LOC107595683,LOC107737872 coding upstream 13053 2786644 ~ 2789093 (+)
ddt ddt,LOC107736937,LOC107662822,LOC107737884,LOC107692330 coding upstream 16011 2784473 ~ 2786135 (+)
chchd10 chchd10,LOC107736936,LOC107692329,LOC107737885,LOC107662830 coding upstream 18121 2782348 ~ 2784025 (+)
gcnt4b.2 LOC107737880,LOC107595710,LOC107662521,LOC107733381,LOC107692321,LOC107736920,LOC107548763,LOC107692322 coding downstream 4842 2831751 ~ 2837249 (+)
LOC122326157 LOC107736921,LOC107595711,LOC107548780,LOC107737879,LOC107692322,LOC107733381,LOC107548763,LOC107595710 coding downstream 15796 2842705 ~ 2845216 (+)
fam169ab fam169ab,LOC107692296,LOC107548785,LOC107736892,LOC107737867,LOC107661277 coding downstream 18871 2845780 ~ 2861350 (+)
trnaa-ugc_120 NA coding downstream 119943 2946852 ~ 2946923 (+)
LOC122326345 NA coding downstream 127870 2954779 ~ 2956580 (+)
G143465 NA non-coding upstream 798 2800730 ~ 2801348 (+)
G143385 NA non-coding upstream 258839 2487403 ~ 2543307 (+)
G143349 NA non-coding upstream 311946 2426489 ~ 2490200 (+)
G143356 NA non-coding upstream 398056 2402747 ~ 2404090 (+)
G143354 LOC107595722,LOC107662860,LOC107739708,LOC107548798 non-coding upstream 402077 2399072 ~ 2400069 (+)
G143491 NA non-coding downstream 35863 2862772 ~ 2863017 (+)
G143509 NA non-coding downstream 103353 2930262 ~ 2937617 (+)
G143578 NA non-coding downstream 488268 3315177 ~ 3315473 (+)
LOC122326852 NA non-coding downstream 509352 3336261 ~ 3336689 (+)
G143590 NA non-coding downstream 661602 3488511 ~ 3492587 (+)
G143321 LOC107739705,LOC107661415,LOC107736881,LOC107692311,LOC107548771 other upstream 564951 2233659 ~ 2237195 (+)
stxbp1a stxbp1a,stxbp1,LOC107661518,LOC107736879,LOC108437460 other upstream 745467 2030104 ~ 2056679 (+)
LOC122326311 NA other upstream 1573091 1227998 ~ 1229055 (+)
glrx glrx,LOC107661879,LOC107665229 other upstream 1646004 1153104 ~ 1156142 (+)
entpd2b entpd2b,LOC107662923,LOC107580497,LOC107736658 other upstream 1746221 1050838 ~ 1055925 (+)
gnrh2 LOC107595723 other downstream 2205 2829114 ~ 2830356 (+)
LOC122326950 ehmt2,LOC107661424,LOC107739706,LOC107706570,LOC107566632,LOC107751678,LOC107694038,LOC107694747,LOC107557450 other downstream 471081 3297990 ~ 3320013 (+)
G143650 barhl1b,barhl1,LOC107556939,LOC100712077,LOC102792687,LOC107708351,LOC107595696 other downstream 874520 3701429 ~ 3704397 (+)
G143725 si:ch73-287m6.1,LOC107565381,LOC107708362 other downstream 1279892 4106801 ~ 4213772 (+)
G143726 si:dkey-112m2.1,LOC107661187,LOC107708339,LOC107565378,LOC107684910,LOC107566201,LOC108437247 other downstream 1305527 4132436 ~ 4386212 (+)

Expression


Co-expression Network