trnaa-ugc_120


Basic Information

Item Value
gene id trnaa-ugc_120
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 2946852 ~ 2946923 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>unassigned_transcript_2518
ggggatgtagctcagtggtagagcgcatgctttgcatgtatgaggccCCGGGTTCAATCCCCGGCATCTCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_2518 True 72 tRNA 0.58 1 2946852 2946923

Neighbor

gene id symbol gene type direction distance location
fam169ab fam169ab,LOC107692296,LOC107548785,LOC107736892,LOC107737867,LOC107661277 coding upstream 85502 2845780 ~ 2861350 (+)
LOC122326157 LOC107736921,LOC107595711,LOC107548780,LOC107737879,LOC107692322,LOC107733381,LOC107548763,LOC107595710 coding upstream 101636 2842705 ~ 2845216 (+)
gcnt4b.2 LOC107737880,LOC107595710,LOC107662521,LOC107733381,LOC107692321,LOC107736920,LOC107548763,LOC107692322 coding upstream 109603 2831751 ~ 2837249 (+)
ptpra ptpra,LOC107736890,LOC107737868 coding upstream 119943 2802146 ~ 2826909 (+)
idh3b idh3b,LOC107737870,LOC107736889,LOC107548787 coding upstream 146352 2793688 ~ 2800500 (+)
LOC122326345 NA coding downstream 7856 2954779 ~ 2956580 (+)
LOC122326342 NA coding downstream 10263 2957186 ~ 2964676 (+)
LOC122326343 LOC107692324,LOC107595714,LOC107737877,LOC107686912,LOC107736923,LOC107563914 coding downstream 19243 2966166 ~ 2976051 (+)
LOC122326816 NA coding downstream 344774 3291697 ~ 3294008 (+)
LOC122326784 ube2g1b,ub2g1,LOC107686891,LOC107595690,LOC106579958,LOC103152401,LOC106931442 coding downstream 379577 3326500 ~ 3329805 (+)
G143509 NA non-coding upstream 9235 2930262 ~ 2937617 (+)
G143491 NA non-coding upstream 83835 2862772 ~ 2863017 (+)
G143465 NA non-coding upstream 145504 2800730 ~ 2801348 (+)
G143385 NA non-coding upstream 403545 2487403 ~ 2543307 (+)
G143349 NA non-coding upstream 456652 2426489 ~ 2490200 (+)
G143578 NA non-coding downstream 368254 3315177 ~ 3315473 (+)
LOC122326852 NA non-coding downstream 389338 3336261 ~ 3336689 (+)
G143590 NA non-coding downstream 541588 3488511 ~ 3492587 (+)
G143638 NA non-coding downstream 661996 3608919 ~ 3610050 (+)
G143656 NA non-coding downstream 804676 3751599 ~ 3752198 (+)
gnrh2 LOC107595723 other upstream 116496 2829114 ~ 2830356 (+)
G143321 LOC107739705,LOC107661415,LOC107736881,LOC107692311,LOC107548771 other upstream 709657 2233659 ~ 2237195 (+)
stxbp1a stxbp1a,stxbp1,LOC107661518,LOC107736879,LOC108437460 other upstream 890173 2030104 ~ 2056679 (+)
LOC122326311 NA other upstream 1717797 1227998 ~ 1229055 (+)
glrx glrx,LOC107661879,LOC107665229 other upstream 1790710 1153104 ~ 1156142 (+)
LOC122326950 ehmt2,LOC107661424,LOC107739706,LOC107706570,LOC107566632,LOC107751678,LOC107694038,LOC107694747,LOC107557450 other downstream 351067 3297990 ~ 3320013 (+)
G143650 barhl1b,barhl1,LOC107556939,LOC100712077,LOC102792687,LOC107708351,LOC107595696 other downstream 754506 3701429 ~ 3704397 (+)
G143725 si:ch73-287m6.1,LOC107565381,LOC107708362 other downstream 1159878 4106801 ~ 4213772 (+)
G143726 si:dkey-112m2.1,LOC107661187,LOC107708339,LOC107565378,LOC107684910,LOC107566201,LOC108437247 other downstream 1185513 4132436 ~ 4386212 (+)
si:ch211-222n4.2 LOC107722820,LOC107591717,LOC107685267,LOC107589267,LOC107706417 other downstream 1565003 4511926 ~ 4524180 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnaa-ugc-209 NA coding NC_050571.1 CM025858.1 31123078 ~ 31123149 (+)
eurasian perch (Perca fluviatilis) trnaa-ugc_23 NA non-coding NC_053133.1 CM020930.1 3205297 ~ 3205368 (+)
striped catfish (Pangasianodon hypophthalmus) trnaa-ugc_15 NA misc NC_047612.1 CM018558.1 18093138 ~ 18093209 (+)
tiger barb (Puntius tetrazona) trnar-acg_41 NA coding NC_056706.1 CM032075.1 11797588 ~ 11797660 (+)
mexican tetra (Astyanax mexicanus) trnaa-ugc_15 NA coding NW_019172608.1 APWO02002206.1 212072 ~ 212143 (-)
mexican tetra (Astyanax mexicanus) trnaa-ugc_29 NA coding NW_019172788.1 APWO02002386.1 163922 ~ 163993 (-)