trnaa-ugc_29


Basic Information

Item Value
gene id trnaa-ugc_29
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172788.1
NCBI id APWO02002386.1
chromosome length 185308
location 163922 ~ 163993 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>trnaa-ugc_29
GGGGATGTAGCTCAGTGGTAGAGCGCATGCTTTGCATGTATGAGGCCCCGGGTTCAATCCCCGGCATCTCCa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnaa-ugc_29 True 72 tRNA 0.58 1 163922 163993

Neighbor

gene id symbol gene type direction distance location
LOC103033687 LOC107579688 coding downstream 9815 142315 ~ 154107 (-)
LOC103034006 LOC103034006 coding downstream 23332 136203 ~ 140590 (-)
LOC103033029 NA coding downstream 30726 130000 ~ 133196 (-)
LOC103033366 NA coding downstream 35145 124409 ~ 128777 (-)
LOC111190876 NA coding downstream 85331 3201 ~ 78591 (-)
LOC111190877 manbal,LOC107666036,LOC107744407 other downstream 61333 98748 ~ 102589 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000006_09884959_09889794 NA coding CI01000006 null 9884439 ~ 9890289 (+)
rainbow trout (Oncorhynchus mykiss) trnaa-ugc-209 NA coding NC_050571.1 CM025858.1 31123078 ~ 31123149 (+)
eurasian perch (Perca fluviatilis) trnaa-ugc_23 NA non-coding NC_053133.1 CM020930.1 3205297 ~ 3205368 (+)
striped catfish (Pangasianodon hypophthalmus) trnaa-ugc_15 NA misc NC_047612.1 CM018558.1 18093138 ~ 18093209 (+)
tiger barb (Puntius tetrazona) trnaa-ugc_120 NA coding NC_056719.1 CM032088.1 2946852 ~ 2946923 (+)
tiger barb (Puntius tetrazona) trnar-acg_41 NA coding NC_056706.1 CM032075.1 11797588 ~ 11797660 (+)
mexican tetra (Astyanax mexicanus) trnaa-ugc_15 NA coding NW_019172608.1 APWO02002206.1 212072 ~ 212143 (-)