CI01000006_09884959_09889794


Basic Information

Item Value
gene id CI01000006_09884959_09889794
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 9884439 ~ 9890289 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_09884959_09889794.mRNA
GTATAAAATGGTTCATATAACATTTTTTCCCTCAAATAATATATTACAAAGGCTTAACACCCATTGAGGCTCCAGCCGCTCCACTATAGTTATGTAGACACTTGAGACAAGCAGAACTATTCAAACTTTTTTTTAGCTGTCTAGGAGAATGAGTTAACAGCATGACCATGACTTGCATAACATCTCTCCAAAATATGGGGTTGGACACATAAAAGAAAGTCACAGGGAGAAACCGAGGAGAAAATATTGTCAGTTGAATGTCTGGAACATAAAAGCAAGGTAGGATATTTCATTTATGTGTCTATGTAAGCTAACATTTCAAGACTCTCTATGCTTGATCTTTTGTAATTTCAGAATTGAAGCTTTTATAAACTTTTATATCATTAAATAGCTTTATTAGACATTTCTGTTATTAGCTGAGGAATAATAAAACTATTGAAGATGATTGCCTTAAAGATCTATCAAAAGAATAAAGCTCTTTTCATTTTATCCAATCGGTTTATTTCTGCTTTACCCACAGATGCGTTTGCCTGTGTCCTTCTATGTGCTGAGCGTGTGGCTCGGATTTTTGTGTGTGTTATTTGTGTGTTTGTGGAGTGGGACCTGGAGAGGAGGATTTGCTTGGGATGGTTCTTTTCTGCAGATTAACTGGCACCCGGTCTTAATGGTGACGAGTCTCGTGGTGCTATATGGAAATGTGCCAACAACATCCCTCATCTGTATTCATTACACAGCTGGACTGGGATCTCCACAGTGGCCCTATTCACTTTGCAGAGCCTGCCTGAAACCTCTCCACATCTGGATGGGCATGGCCATCTTCACCCTGAGTCTCATCACCAGCCTGTCAGGGATCAATGAGAAACTACTGCTGACGTTAACTGGGAGAAATGGAAGCAATACAGAACCGTATACTTTACTGCCTGCTGAAGCTCTGTTTGCAAACTCATTAGGCATTTTAGTTGTTATTTTTGGATTGGTAGTGCTGAAAATTCTGACCAATCAGAAATGGAAGAATCCAGAGTTTGAGAATGACACTGACAGGATGCCAGATGAAGACTGGAGTAAACAAGATAAAGAAAGAAACATGCTTTGTGTCATAATTATAAAAATCACGTTTTAATTACTCTGTGGCAGCTGTTTGGTTTTATGCCTTGTCCATCTACACATCCAAAACATCTGAATGTCAGTTGATTGACATGTAACCTTATCAATGTTAGAGACAGACCTCTTGTGGTTAGCAAGAAAATTGCAAGGAAAAAAATGTACTATATATTACGTCTTTAACATTACACTTTTATTTGATCTATTTTAGGTTTTAGAATTGTAATTATAATGTTGTTGTAATTGTAAAGTTGTAGTCCTAAAGAAAAGTGGAGATGCCGGGGATTGAACCCGGGGCCTCATACATGCAAAGCATGCGCTCTACCACTGAGCTACATCCCCTTGCGAAACCACTCGGTATAGATTCCTATGAGAGCTTTGTAGAAGTCCATTTATGAAATTAAATTTTTCTAACACTTACAAAATGTGATATTCCCACTTTAGAAAAACATTTTCTCTTAAAGCTAATTTGTTAAAAACCTCCGTAGCTTTATTCTAATGATTCGTTATTAAA

Function

NR:

description
Cytochrome b561

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_09884959_09889794.mRNA True 1615 mRNA 0.37 5 9884439 9890289

Neighbor

gene id symbol gene type direction distance location
CI01000006_09836923_09844045 NA coding upstream 40091 9836923 ~ 9846207 (+)
CI01000006_09712289_09783579 UNC5DA coding upstream 100860 9712289 ~ 9783579 (+)
CI01000006_09569228_09574340 NA coding upstream 309378 9568280 ~ 9575061 (+)
CI01000006_09497508_09511925 NA coding upstream 371719 9496806 ~ 9512720 (+)
CI01000006_09334843_09337295 FAM216A coding upstream 547036 9334801 ~ 9337403 (+)
CI01000006_09891107_09897750 NA coding downstream 818 9891107 ~ 9897763 (+)
CI01000006_09910027_09913958 NA coding downstream 19081 9909370 ~ 9914104 (+)
CI01000006_09918611_09921465 MZT2B coding downstream 28322 9918611 ~ 9921793 (+)
CI01000006_09998680_10008491 LHX5 coding downstream 108391 9998680 ~ 10009048 (+)
CI01000006_10177090_10192651 NA coding downstream 286801 10177090 ~ 10193519 (+)
G46569 NA non-coding upstream 27344 9856747 ~ 9857095 (+)
G46566 NA non-coding upstream 32605 9851629 ~ 9851834 (+)
G46565 NA non-coding upstream 32981 9851135 ~ 9851458 (+)
G46526 NA non-coding upstream 54865 9819361 ~ 9829574 (+)
G46662 NA non-coding downstream 96625 9986914 ~ 9987133 (+)
G46665 NA non-coding downstream 98692 9988981 ~ 9989253 (+)
G46671 NA non-coding downstream 103454 9993743 ~ 9994022 (+)
G46677 NA non-coding downstream 122601 10012890 ~ 10013116 (+)
G46680 NA non-coding downstream 126061 10016350 ~ 10017401 (+)
G45416 NA other upstream 1049742 8818814 ~ 8834697 (+)
G45355 NA other upstream 1672051 8209555 ~ 8212388 (+)
CI01000006_08198328_08199463 NA other upstream 1684294 8197881 ~ 8200145 (+)
G45336 NA other upstream 1862488 8019342 ~ 8021951 (+)
G45265 NA other upstream 1964084 7883867 ~ 7920355 (+)
G46652 NA other downstream 266290 10156579 ~ 10159251 (+)
G47145 NA other downstream 595069 10485358 ~ 10511806 (+)
G47159 NA other downstream 1525940 11416229 ~ 11521703 (+)
G47318 NA other downstream 1733978 11624267 ~ 11638252 (+)
G48094 NA other downstream 2387331 12277620 ~ 12279541 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) trnaa-ugc_23 NA non-coding NC_053133.1 CM020930.1 3205297 ~ 3205368 (+)
striped catfish (Pangasianodon hypophthalmus) G284520 NA non-coding NC_047612.1 CM018558.1 18088654 ~ 18088942 (-)
tiger barb (Puntius tetrazona) trnar-acg_41 NA coding NC_056706.1 CM032075.1 11797588 ~ 11797660 (+)
mexican tetra (Astyanax mexicanus) trnaa-ugc_29 NA coding NW_019172788.1 APWO02002386.1 163922 ~ 163993 (-)