RNA id: CI01000006_09884959_09889794.mRNA


Basic Information

Item Value
RNA id CI01000006_09884959_09889794.mRNA
length 1615
RNA type mRNA
GC content 0.37
exon number 5
gene id CI01000006_09884959_09889794
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 9884439 ~ 9890289 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTATAAAATGGTTCATATAACATTTTTTCCCTCAAATAATATATTACAAAGGCTTAACACCCATTGAGGCTCCAGCCGCTCCACTATAGTTATGTAGACACTTGAGACAAGCAGAACTATTCAAACTTTTTTTTAGCTGTCTAGGAGAATGAGTTAACAGCATGACCATGACTTGCATAACATCTCTCCAAAATATGGGGTTGGACACATAAAAGAAAGTCACAGGGAGAAACCGAGGAGAAAATATTGTCAGTTGAATGTCTGGAACATAAAAGCAAGGTAGGATATTTCATTTATGTGTCTATGTAAGCTAACATTTCAAGACTCTCTATGCTTGATCTTTTGTAATTTCAGAATTGAAGCTTTTATAAACTTTTATATCATTAAATAGCTTTATTAGACATTTCTGTTATTAGCTGAGGAATAATAAAACTATTGAAGATGATTGCCTTAAAGATCTATCAAAAGAATAAAGCTCTTTTCATTTTATCCAATCGGTTTATTTCTGCTTTACCCACAGATGCGTTTGCCTGTGTCCTTCTATGTGCTGAGCGTGTGGCTCGGATTTTTGTGTGTGTTATTTGTGTGTTTGTGGAGTGGGACCTGGAGAGGAGGATTTGCTTGGGATGGTTCTTTTCTGCAGATTAACTGGCACCCGGTCTTAATGGTGACGAGTCTCGTGGTGCTATATGGAAATGTGCCAACAACATCCCTCATCTGTATTCATTACACAGCTGGACTGGGATCTCCACAGTGGCCCTATTCACTTTGCAGAGCCTGCCTGAAACCTCTCCACATCTGGATGGGCATGGCCATCTTCACCCTGAGTCTCATCACCAGCCTGTCAGGGATCAATGAGAAACTACTGCTGACGTTAACTGGGAGAAATGGAAGCAATACAGAACCGTATACTTTACTGCCTGCTGAAGCTCTGTTTGCAAACTCATTAGGCATTTTAGTTGTTATTTTTGGATTGGTAGTGCTGAAAATTCTGACCAATCAGAAATGGAAGAATCCAGAGTTTGAGAATGACACTGACAGGATGCCAGATGAAGACTGGAGTAAACAAGATAAAGAAAGAAACATGCTTTGTGTCATAATTATAAAAATCACGTTTTAATTACTCTGTGGCAGCTGTTTGGTTTTATGCCTTGTCCATCTACACATCCAAAACATCTGAATGTCAGTTGATTGACATGTAACCTTATCAATGTTAGAGACAGACCTCTTGTGGTTAGCAAGAAAATTGCAAGGAAAAAAATGTACTATATATTACGTCTTTAACATTACACTTTTATTTGATCTATTTTAGGTTTTAGAATTGTAATTATAATGTTGTTGTAATTGTAAAGTTGTAGTCCTAAAGAAAAGTGGAGATGCCGGGGATTGAACCCGGGGCCTCATACATGCAAAGCATGCGCTCTACCACTGAGCTACATCCCCTTGCGAAACCACTCGGTATAGATTCCTATGAGAGCTTTGTAGAAGTCCATTTATGAAATTAAATTTTTCTAACACTTACAAAATGTGATATTCCCACTTTAGAAAAACATTTTCTCTTAAAGCTAATTTGTTAAAAACCTCCGTAGCTTTATTCTAATGATTCGTTATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52947 lncRNA upstream 27344 9856747 ~ 9857095 (+) True G46569
TU52943 lncRNA upstream 32605 9851629 ~ 9851834 (+) True G46566
TU52942 lncRNA upstream 32981 9851135 ~ 9851458 (+) True G46565
TU52900 lncRNA upstream 33915 9818044 ~ 9850524 (+) True G46523
TU52898 lncRNA upstream 38232 9840098 ~ 9846207 (+) True CI01000006_09836923_09844045
TU53056 lncRNA downstream 96625 9986914 ~ 9987133 (+) True G46662
TU53059 lncRNA downstream 98692 9988981 ~ 9989253 (+) True G46665
TU53065 lncRNA downstream 103454 9993743 ~ 9994022 (+) True G46671
TU53071 lncRNA downstream 122601 10012890 ~ 10013116 (+) True G46677
TU53076 lncRNA downstream 126061 10016350 ~ 10017401 (+) False G46680
CI01000006_09836923_09844045.mRNA mRNA upstream 40091 9836923 ~ 9844348 (+) False CI01000006_09836923_09844045
CI01000006_09712289_09783579.mRNA mRNA upstream 100860 9712289 ~ 9783579 (+) True CI01000006_09712289_09783579
CI01000006_09569228_09574340.mRNA mRNA upstream 309378 9568280 ~ 9575061 (+) True CI01000006_09569228_09574340
CI01000006_09497508_09511925.mRNA mRNA upstream 371719 9496806 ~ 9512720 (+) True CI01000006_09497508_09511925
CI01000006_09334843_09337295.mRNA mRNA upstream 547036 9334801 ~ 9337403 (+) True CI01000006_09334843_09337295
CI01000006_09891107_09897750.mRNA mRNA downstream 818 9891107 ~ 9897763 (+) True CI01000006_09891107_09897750
CI01000006_09910027_09913958.mRNA mRNA downstream 19081 9909370 ~ 9914104 (+) True CI01000006_09910027_09913958
CI01000006_09918611_09921465.mRNA mRNA downstream 28322 9918611 ~ 9921793 (+) True CI01000006_09918611_09921465
CI01000006_09998680_10008491.mRNA mRNA downstream 108391 9998680 ~ 10009048 (+) True CI01000006_09998680_10008491
CI01000006_10177090_10192651.mRNA mRNA downstream 286801 10177090 ~ 10193519 (+) True CI01000006_10177090_10192651
TU51632 other upstream 1049742 8818814 ~ 8834697 (+) True G45416
TU51562 other upstream 1672051 8209555 ~ 8212388 (+) True G45355
TU51557 other upstream 1684294 8198844 ~ 8198909 (+) True G45351
TU51555 other upstream 1684737 8197881 ~ 8199702 (+) False CI01000006_08198328_08199463
TU53040 other downstream 266290 10156579 ~ 10159251 (+) False G46652
TU53607 other downstream 595069 10485358 ~ 10511806 (+) True G47145
TU53635 other downstream 1525940 11416229 ~ 11416560 (+) False G47159
TU53639 other downstream 1525940 11416229 ~ 11521703 (+) True G47159
TU53826 other downstream 1733978 11624267 ~ 11638252 (+) True G47318

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00038385 False 1680 mRNA 0.40 5 NC_007132.7 16102938 ~ 16114061 (-)
eurasian perch (Perca fluviatilis) unassigned_transcript_1296 True 72 tRNA 0.58 1 NC_053133.1 3205297 ~ 3205368 (+)
striped catfish (Pangasianodon hypophthalmus) TU337055 True 289 lncRNA 0.45 1 NC_047612.1 18088654 ~ 18088942 (-)
tiger barb (Puntius tetrazona) unassigned_transcript_1296 True 73 tRNA 0.58 1 NC_056706.1 11797588 ~ 11797660 (+)
mexican tetra (Astyanax mexicanus) trnaa-ugc_29 True 72 tRNA 0.58 1 NW_019172788.1 163922 ~ 163993 (-)