RNA id: TU51557


Basic Information

Item Value
RNA id TU51557
length 66
RNA type TUCP
GC content 0.49
exon number 1
gene id G45351
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 8159516 ~ 8198909 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATCAAAAACGTCATAATCGCAGCCCACGGCAACAGCCTGCGTGGTATCGTCAAGCACTTAGACAGCATGTCAGATGCAGCCATCATGGAGCTCAACCTGCCCACTGGCATTCCCATCGTCTATGAGCTGGATAAGGACCTGAAGCCCATCAAACCCATGCAGTTCCTGGGAGATGAGGAAACAGTGCGCAAAGCCATGGAGGCTGTGGCCGCTCAGGGCAAGGTCAAAAAGTGAAGAGCTGACACAAAAGCAGAGACTGAAACACCCCCAAACATAAAGGAACGGGGAGCACTATTGGATTCAAGCCTGTTTGACGACCACTAACTACATAAAAGTGAACACGTGACATGGACATGACCCCTCCCCCCAAACATTCTCACATTACACCACGATTTGTAAACCCCCTTGTGTTGGACTGCCCCACTCTGACACAGCAAATAAAAGTGAGCACCATTTTGTGTACTACCTTTTTCGCTTGAGTCATTCCTCCCCCTCTTCTTCCCTCTCTGCATTAATTCAGGGATTTCAGCAGAACGGTGCGCTGCTGTGTAAGCTGACCCAAAGGGCACACCAAAGAGGTTGCAGAGTTCATTTTGGCAGCCGTCCCACACTGTGGTGCAGTGGCGGCTCATCTAGCCATAGTTCTCAATGAGAGCCTGCTGCACAGACGGCCCATAATGGCTACAGCATCCTGCCAGCAACACAATTAGCAGCAGCTCAGGTTCTCTGGTGACAAAAGGACAGGGGTGTGTGTGGACGTGCATGTGTGATAGTCTGTGATTGGAAAAGGATGAAGCCGGAGCTAGACAGTCACAGTACCCCAAAATTGCACAGGGACTAATTCATTATGTAGGAAGACTAATTTTAGGCTGAGCCTTCAGCATAGAATAACCTATTATTTGAATCTATTATTTAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51601 lncRNA upstream 39377 8159245 ~ 8159467 (+) True G45392
TU51600 lncRNA upstream 39951 8158636 ~ 8158893 (+) True G45391
TU51563 lncRNA upstream 41309 8154796 ~ 8157535 (+) True G45356
TU51588 lncRNA upstream 52764 8133207 ~ 8146080 (+) True G45381
TU51547 lncRNA upstream 129600 8069032 ~ 8069244 (+) True G45346
TU51566 lncRNA downstream 34593 8234738 ~ 8238406 (+) True G45359
TU51658 lncRNA downstream 132434 8332579 ~ 8333478 (+) True G45438
TU51780 lncRNA downstream 372549 8572694 ~ 8574744 (+) True G45528
TU51796 lncRNA downstream 482836 8682981 ~ 8739598 (+) True G45543
TU51884 lncRNA downstream 505188 8705333 ~ 8705667 (+) True G45630
CI01000006_08184916_08188512.mRNA mRNA upstream 9545 8184799 ~ 8189299 (+) True CI01000006_08184916_08188512
CI01000006_08108713_08122179.mRNA mRNA upstream 76480 8108563 ~ 8122364 (+) True CI01000006_08108713_08122179
CI01000006_08025159_08032131.mRNA mRNA upstream 166221 8025159 ~ 8032623 (+) True CI01000006_08025159_08032131
CI01000006_07939608_07940846.mRNA mRNA upstream 257429 7939318 ~ 7941415 (+) True CI01000006_07939608_07940846
CI01000006_07757777_07795187.mRNA mRNA upstream 403586 7757526 ~ 7795258 (+) True CI01000006_07757777_07795187
CI01000006_08222787_08225568.mRNA mRNA downstream 22642 8222787 ~ 8225568 (+) True CI01000006_08222787_08225568
CI01000006_08305571_08341681.mRNA mRNA downstream 105426 8305571 ~ 8341681 (+) True CI01000006_08305571_08341681
CI01000006_08366730_08400944.mRNA mRNA downstream 165945 8366090 ~ 8402325 (+) True CI01000006_08366730_08400944
CI01000006_08528828_08531392.mRNA mRNA downstream 328683 8528828 ~ 8531457 (+) True CI01000006_08528828_08531392
CI01000006_08673737_08674685.mRNA mRNA downstream 473435 8673580 ~ 8675114 (+) True CI01000006_08673737_08674685
TU51558 other upstream 52 8159516 ~ 8159528 (+) False G45351
TU51537 other upstream 176893 8019342 ~ 8021951 (+) True G45336
TU51448 other upstream 278489 7883867 ~ 7920355 (+) False G45265
TU51341 other upstream 515173 7621991 ~ 7683671 (+) False G45178
TU51004 other upstream 810960 7356352 ~ 7387884 (+) True G44872
TU51562 other downstream 9410 8209555 ~ 8212388 (+) True G45355
TU51632 other downstream 618669 8818814 ~ 8834697 (+) True G45416
TU53040 other downstream 1956434 10156579 ~ 10159251 (+) False G46652
TU53607 other downstream 2285213 10485358 ~ 10511806 (+) True G47145
TU53635 other downstream 3216084 11416229 ~ 11416560 (+) False G47159

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00020778 True 768 mRNA 0.63 3 CM030127.1 32642924 ~ 32644550 (-)