RNA id: CI01000006_08528828_08531392.mRNA



Basic Information


Item Value
RNA id CI01000006_08528828_08531392.mRNA
length 545
RNA type mRNA
GC content 0.48
exon number 3
gene id CI01000006_08528828_08531392
representative True

Chromosome Information


Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 8528828 ~ 8531457 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GGCTCCAAATACTATTCTAGCAAGTTTCTGGAGACGTATGATGCACACTTCATGACTGTTAGTCGTGTGAGGTGGAATCCCTTCCATCCCAATGTCTTCATCTCCTGCGGCTGGGACTGGATGGTGAAAATTTGGGATCACACAATTGAGTATGAGCAGCACCATTCCCTACAGCGCTATATCTACAGGCAGCCTAATTTAGGCAATAGCTCTCCATTAAGCTTAACAACAAGCAAGCTAGGCTGGCACTGGTCTCCCATTTTTACCTTTGAACTGAAAACTTCAGTGACAGATGTGGCCTGGGCTCCATACTCCTCCACTGTCTTTGCTGCTGTCACCACTGATGGAAAGGAATTAGTCTCAAATCACACAGCTGGTCTTACGCACTTGTCTAAGGCTGCTTCAGGCATCACCTGTCAGTCTTGCATCTCGATCGGTTTGAACTGCCGTGCCATGGTGGCTATCGCTGTTATTTGCTAACACCGTTACTCAGACAGGCTAAATTACACCTGCCCTCTACAGGAAGCCCATTACAGCGTGATCCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU51658 lncRNA upstream 195350 8332579 ~ 8333478 (+) True G45438
TU51566 lncRNA upstream 290422 8234738 ~ 8238406 (+) True G45359
TU51601 lncRNA upstream 369361 8159245 ~ 8159467 (+) True G45392
TU51600 lncRNA upstream 369935 8158636 ~ 8158893 (+) True G45391
TU51563 lncRNA upstream 371293 8154796 ~ 8157535 (+) True G45356
TU51780 lncRNA downstream 41237 8572694 ~ 8574744 (+) True G45528
TU51796 lncRNA downstream 151524 8682981 ~ 8739598 (+) True G45543
TU51884 lncRNA downstream 173876 8705333 ~ 8705667 (+) True G45630
TU51628 lncRNA downstream 218454 8749911 ~ 8750496 (+) True G45413
TU51994 lncRNA downstream 392373 8923830 ~ 8924046 (+) True G45734
CI01000006_08366730_08400944.mRNA mRNA upstream 126503 8366090 ~ 8402325 (+) True CI01000006_08366730_08400944
CI01000006_08305571_08341681.mRNA mRNA upstream 187147 8305571 ~ 8341681 (+) True CI01000006_08305571_08341681
CI01000006_08222787_08225568.mRNA mRNA upstream 303260 8222787 ~ 8225568 (+) True CI01000006_08222787_08225568
CI01000006_08198328_08199463.mRNA mRNA upstream 329162 8198197 ~ 8199666 (+) False CI01000006_08198328_08199463
CI01000006_08184916_08188512.mRNA mRNA upstream 339529 8184799 ~ 8189299 (+) True CI01000006_08184916_08188512
CI01000006_08673737_08674685.mRNA mRNA downstream 142123 8673580 ~ 8675114 (+) True CI01000006_08673737_08674685
CI01000006_08757702_08765273.mRNA mRNA downstream 225962 8757419 ~ 8766062 (+) True CI01000006_08757702_08765273
CI01000006_08847431_08853895.mRNA mRNA downstream 314803 8846260 ~ 8853921 (+) True CI01000006_08847431_08853895
CI01000006_09004949_09014310.mRNA mRNA downstream 473217 9004674 ~ 9014589 (+) True CI01000006_09004949_09014310
CI01000006_09066050_09070383.mRNA mRNA downstream 534505 9065962 ~ 9070581 (+) True CI01000006_09066050_09070383
TU51562 other upstream 316440 8209555 ~ 8212388 (+) True G45355
TU51557 other upstream 328683 8198844 ~ 8198909 (+) True G45351
TU51555 other upstream 329126 8197881 ~ 8199702 (+) False CI01000006_08198328_08199463
TU51552 other upstream 329126 8198844 ~ 8198909 (+) False G45351
TU51558 other upstream 330036 8159516 ~ 8159528 (+) False G45351
TU51632 other downstream 287357 8818814 ~ 8834697 (+) True G45416
TU53040 other downstream 1625122 10156579 ~ 10159251 (+) False G46652
TU53607 other downstream 1953901 10485358 ~ 10511806 (+) True G47145
TU53635 other downstream 2884772 11416229 ~ 11416560 (+) False G47159
TU53639 other downstream 2884772 11416229 ~ 11521703 (+) True G47159

Expression Profile