RNA id: CI01000006_09004949_09014310.mRNA


Basic Information

Item Value
RNA id CI01000006_09004949_09014310.mRNA
length 2843
RNA type mRNA
GC content 0.49
exon number 17
gene id CI01000006_09004949_09014310
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 9004674 ~ 9014589 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAATAAAAACGACATAAGTGTTTTAGATTTTTTGGCATCAGAACCAATAATTATGTTTCCCCTCCTGTGGTTTGGTTTTTCATGATATTAAGAAAGAGTTAATTCTGATGGATGATTGGTAAATATTGATCCTTAGTAAACACCACTCCCTTCGTGGACTTTTTTTTTTTTTTTTTTTTTTTAATCTGAGTAATGTCTTGTGGTCTGTGAACAGACTTACAAGGCTAGCATCTAATTTCTGAATGACTCATGTCTAAGACATTCCAAACTTCACCATGTCTCCACCCCACAAGTGGGCGCCCAAATGTCTATCACCACAGAAGGAAACTCCCAGCCACTGGATTTTTATAGTTCAGTTCACTGAGTTTATTTTGCAGTTTGTCTCCAATGTAGATTTAGGATCTTTAGACAGCATGGTGTACCACTCTGAGTTTGAGCGAGCAGGCAAAGAGGCTGGGCTCCAGGTGTGGAGAATTGAGAAGTTTGATTTGGTGGCAGTTCCTGAGAACCTCTATGGAGCGTTCTACACTGGTGACGCTTATGTGGTCCTCAATACTATCAAGCAGCGTTCTGGCAACCTACAGTATGACCTCCACTTCTGGCTAGGTGATTATTGCACGCAGGATGAGAGCGGGGCGGCTGCCATTTTCACAGTGCAGATGGATGACTATTTGGGTGGAAAGCCCATCCAGTACCGTGAAGTTCAGGGCTATGAGTCCAAAGCTTTCCTGGGATATTTTAAAAAAGGGCTGCAGTACATGAAAGGTGGAGTTGCGTCTGGATTCAAGCATGTTGTCACCAATGAAGTTACAGTGCAGCGGGTGCTACAGGTCAAAGGTCGGCGTGTTGTCAGAGCAACAGAAGTGCCAGTCAGCTGGGACAGCTTTAACCAGGGAGACTGCTTCATCCTGGACTTGGGTGATGAGATCTACCAGTGGTGTGGTTCAAAGAGTAACCGCTTCGAGAAGCTAAAAGCTACGCAACTTGCAAAGGGCATTCGTGACAACGAACGCAGTGGACGCGCACGCGTGTATGTGTGTGATGAAGGGATTGAACGAGAAAAGATGTTGGAGGTTCTTGGAGAAAAACCAGACCTGCCTGAAGGAGTGTCTGATGATATCAAGGCTGATGCGTCCAATAGGAAGATGGCCAAACTCTACAAGGTGTCTGATTCCAGTGGAGACATGACCATTGCCCTGGTGGCTGCTGAGAACCCCTTCTCCCAGAGTGCTCTGGAATCAAGCGACTGTTTCATCCTGGATCACGGCTCGGATGGCAAGATCTTTGTTTGGAAAGGCAAAGATGCTAATGTGGAAGAGAGGAAGGCTGCCATGAAGACAGCAGATGAGTTCATTAAGAAAATGGGTTACCCAAAGCATACACAGGTTCAGATTCTCCCAGAGATGGGCGAGACGCCTCTATTCAAACAGTTCTTCAAAAACTGGCGCGATGTGGACCAGACAGACGGCCTGGGTGTTGCTTATGTCTCAAACAGCATCGCTAAGATTGAAAAGGTGCCGTTTGATGCTTCTACACTGCATGATTCACCAGCCATGGCCGCCCAACACGGAATGATCGATGATGGCACTGGAGAGAAACAGATCTGGCGTATTGAAGGTGCAGACAAGGTTCCAGTTGACCCCTCTACTTACGGCCAGTTCTATGGTGGAGACAGTTACATTATCCTGTACAATTACCGCCATGGAGGCAGACAGGGTCACATCATCTACATCTGGCAGGGTACGGACTCCTCACAAGATGAGATTGGGGCATCTGCCATCTTGGGCGCCCAACTGGATGATGAGCTTGGAGGTGGACCTGTGCAGGTGCGGGTGGTCCAGGGTAAGGAACCTGCTCACCTGATGAGTCTGTTTGGAGGGCAGCCCATGGTGGTGCACAAGGGCGGCACCTCCAGGGATGGTGGTCAGACGGCACCAGCCGAGACGCGGCTGTTCCAAATTGACGCAGTGTCCTCCAATCTGAACTCCAATGATGCTTTCGTCCTGGTGACCCCAGCTGCGTCTTTCATATGGGTGGGACGAGGAGCCAGTGATACAGAGAAACATGGGGCGCAGCAGCTATGTGACATCCTTGGAGTGTCGCCCTCCGAGCTGGGTGAAGGAGGAGAGGATGGCAGCTTCTGGGATGCTCTGGGAGGAAAGGCCGATTACCGCACGTCCGCTAGGCTAAAGGACAAGATGAATGCCCACCCGCCACGACTGTTCGCCTGCTCAAACAAAACTGGCCGTTTCATTATTGAAGAAGTCCCTGGAGAAATGACCCAAGAAGACCTGGCTACAGATGATGTCATGATCCTTGACACCTGGGATCAGGTGTTTGTTTGGATCGGAAATGAAGCTCATGATGAAGAGAAGACTGAGGCGATGTCTTCAGCTGCCCGATACATCGAGACAGACCCAGCCAACCGTGACTCACGCACACCTATAGTGAAGATTAAACAGGGCTTTGAGCCGCCCACATTCACTGGCTGGTTCCTGGGCTGGGACCATGACTACTGGAGCACTGACCCCCTGGAGCGGGCCATGGCTGAGCTGGAGATCTGAACTTTGAGCTGTCACCCCTGACCTTTTAGACCCCACTGCCTTACTGCAAGCTGATCAAAGTTGCCCTTAGATACACCAATTTGATGCTTATGAGGGTTTAATCATGGATTCAAAAACCAAAGCTGGTCCTGGGTCAGTATAAAAGGGCAACTTTTAAATCAAGCACCTTACTGCCCTGGGCTTCAGTCACCAAACTTAAGGCAACTTCATGAGGTTCCATTTGTGCCAAAAATGAGTTTGTGCTTTATACTGTACATTTGTCCTTTTCTACTTGTTCAA

Function

GO:

id name namespace
GO:0003779 actin binding molecular_function

KEGG:

id description
K05768 GSN; gelsolin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52027 lncRNA upstream 7353 8997082 ~ 8997321 (+) True G45765
TU52008 lncRNA upstream 49169 8955299 ~ 8955505 (+) True G45748
TU51994 lncRNA upstream 80628 8923830 ~ 8924046 (+) True G45734
TU51628 lncRNA upstream 254178 8749911 ~ 8750496 (+) True G45413
TU51796 lncRNA upstream 265076 8682981 ~ 8739598 (+) True G45543
TU52031 lncRNA downstream 15771 9030360 ~ 9037570 (+) True G45769
TU52041 lncRNA downstream 26378 9040967 ~ 9041168 (+) True G45778
TU52054 lncRNA downstream 39395 9053984 ~ 9054296 (+) True G45787
TU52073 lncRNA downstream 63852 9078441 ~ 9078662 (+) True G45796
TU52594 lncRNA downstream 75437 9090026 ~ 9090232 (+) True G46246
CI01000006_08847431_08853895.mRNA mRNA upstream 150753 8846260 ~ 8853921 (+) True CI01000006_08847431_08853895
CI01000006_08757702_08765273.mRNA mRNA upstream 238612 8757419 ~ 8766062 (+) True CI01000006_08757702_08765273
CI01000006_08673737_08674685.mRNA mRNA upstream 329560 8673580 ~ 8675114 (+) True CI01000006_08673737_08674685
CI01000006_08528828_08531392.mRNA mRNA upstream 473217 8528828 ~ 8531457 (+) True CI01000006_08528828_08531392
CI01000006_08366730_08400944.mRNA mRNA upstream 602349 8366090 ~ 8402325 (+) True CI01000006_08366730_08400944
CI01000006_09066050_09070383.mRNA mRNA downstream 51373 9065962 ~ 9070581 (+) True CI01000006_09066050_09070383
CI01000006_09098943_09103197.mRNA mRNA downstream 84093 9098682 ~ 9104172 (+) True CI01000006_09098943_09103197
CI01000006_09105004_09106470.mRNA mRNA downstream 89626 9104215 ~ 9106963 (+) True CI01000006_09105004_09106470
CI01000006_09107491_09114820.mRNA mRNA downstream 92237 9106826 ~ 9115071 (+) True CI01000006_09107491_09114820
CI01000006_09192219_09195918.mRNA mRNA downstream 177308 9191897 ~ 9195984 (+) True CI01000006_09192219_09195918
TU51632 other upstream 169977 8818814 ~ 8834697 (+) True G45416
TU51562 other upstream 792286 8209555 ~ 8212388 (+) True G45355
TU51557 other upstream 804529 8198844 ~ 8198909 (+) True G45351
TU51555 other upstream 804972 8197881 ~ 8199702 (+) False CI01000006_08198328_08199463
TU53040 other downstream 1141990 10156579 ~ 10159251 (+) False G46652
TU53607 other downstream 1470769 10485358 ~ 10511806 (+) True G47145
TU53635 other downstream 2401640 11416229 ~ 11416560 (+) False G47159
TU53639 other downstream 2401640 11416229 ~ 11521703 (+) True G47159
TU53826 other downstream 2609678 11624267 ~ 11638252 (+) True G47318

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00038402 False 2918 mRNA 0.46 16 NC_007132.7 17572421 ~ 17603182 (-)