G45351


Basic Information

Item Value
gene id G45351
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 8159516 ~ 8198909 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU51558
CACATTGTCATAAAGTGTGTGCACAACAACAAGGAGGGCTGTGTTTGGTGGGCTTAGTCTGGAAAACACTACAGTAAAACCCAAATTCTTTTAAAATGGCTGCTGCTCATCGTCTAGTGATTGTACGCCACGGCGAGAGCACCTGGAATCAGGAGAACCGTTTCTGTGGGTGGTTTGATGCAGACCTCAGTGAAAAGGGTCTGGAGGAAGCAAAGCGTGGTGCACAGGCCATCAAAGATGCAGGCATGAAGTTTGATGTGTGCTACACCTCCGTTCTGAAGCGTGCTATCAAGACTCTTTGGACCATCATGGAGATCACAGACCAGATGTGGCTGCCCGTAGTGCGCACCTGGCGTCTGAATGAACGTCACTATGGTGGTCTGACTGGTCTGAACAAGGCAGAGACAGCAGCCAAGCACGGAGAAGAGCAGGTCAAGATCTGGCGCAGATCATTCGATATTCCCCCTCCTACTATGGATAAGGACCATCCATACCACAAGATCATCAGTGAGGTAAGACAAAGAGATCAGATGTTTATATATATATATATATATATATAT
>TU51552
ATATCAAAAACGTCATAATCGCAGCCCACGGCAACAGCCTGCGTGGTATCGTCAAGCACTTAGACAGCATGTCAGATGCAGCCATCATGGAGCTCAACCTGCCCACTGGCATTCCCATCGTCTATGAGCTGGATAAGGACCTGAAGCCCATCAAACCCATGCAGTTCCTGGGAGATGAGGAAACAGTGCGCAAAGCCATGGAGGCTGTGGCCGCTCAGGGCAAGGTCAAAAAGTGAAGAGCTGACACAAAAGCAGAGACTGAAACACCCCCAAACATAAAGGAACGGGGAGCACTATTGGATTCAAGCCTGTTTGACGACCACTAACTACATAAAAGTGAACACGTGACATGGACATGACCCCTCCCCCCAAACATTCTCACATTACACCACGATTTGTAAACCCCCTTGTGTTGGACTGCCCCACTCTGACACAGCAAATAAAAGTGAGCACCATTTTGTGTACTACCTTTTTC
>TU51557
ATATCAAAAACGTCATAATCGCAGCCCACGGCAACAGCCTGCGTGGTATCGTCAAGCACTTAGACAGCATGTCAGATGCAGCCATCATGGAGCTCAACCTGCCCACTGGCATTCCCATCGTCTATGAGCTGGATAAGGACCTGAAGCCCATCAAACCCATGCAGTTCCTGGGAGATGAGGAAACAGTGCGCAAAGCCATGGAGGCTGTGGCCGCTCAGGGCAAGGTCAAAAAGTGAAGAGCTGACACAAAAGCAGAGACTGAAACACCCCCAAACATAAAGGAACGGGGAGCACTATTGGATTCAAGCCTGTTTGACGACCACTAACTACATAAAAGTGAACACGTGACATGGACATGACCCCTCCCCCCAAACATTCTCACATTACACCACGATTTGTAAACCCCCTTGTGTTGGACTGCCCCACTCTGACACAGCAAATAAAAGTGAGCACCATTTTGTGTACTACCTTTTTCGCTTGAGTCATTCCTCCCCCTCTTCTTCCCTCTCTGCATTAATTCAGGGATTTCAGCAGAACGGTGCGCTGCTGTGTAAGCTGACCCAAAGGGCACACCAAAGAGGTTGCAGAGTTCATTTTGGCAGCCGTCCCACACTGTGGTGCAGTGGCGGCTCATCTAGCCATAGTTCTCAATGAGAGCCTGCTGCACAGACGGCCCATAATGGCTACAGCATCCTGCCAGCAACACAATTAGCAGCAGCTCAGGTTCTCTGGTGACAAAAGGACAGGGGTGTGTGTGGACGTGCATGTGTGATAGTCTGTGATTGGAAAAGGATGAAGCCGGAGCTAGACAGTCACAGTACCCCAAAATTGCACAGGGACTAATTCATTATGTAGGAAGACTAATTTTAGGCTGAGCCTTCAGCATAGAATAACCTATTATTTGAATCTATTATTTAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU51558 False 13 TUCP 0.39 1 8159516 8159528
TU51552 False 66 TUCP 0.49 1 8198844 8198909
TU51557 True 66 TUCP 0.49 1 8198844 8198909

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00020778 pgam2,LOC100691625,LOC101470049,LOC107706476,LOC107700776 coding CM030127.1 CM030127.1 32642924 ~ 32644550 (-)