AMCG00020778 (pgam2,LOC100691625,LOC101470049,LOC107706476,LOC107700776)


Basic Information

Item Value
gene id AMCG00020778
gene name pgam2,LOC100691625,LOC101470049,LOC107706476,LOC107700776
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 32642924 ~ 32644550 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020778
ATGGCAGCTGCCCACAGACTGGTGATCGTGCGCCACGGGGAGAGCTCCTGGAACCAGGAGAACCGCTTCTGCGGCTGGTTCGACGCCGACCTGAGCGAGAAGGGCCTGGAGGAGGCCAAGAGGGGTGCGCAGGCTCTGAAAGACGCCGGCTACAAGTTCGACATCTGCTTCACCTCCGTGCTGAAGCGGGCCATCCGCACGCTGTGGACCATCATGGAGGGCACCGACCAGATGTGGCTGCCCGTGATCCGCAGCTGGCGCCTTAACGAGCGGCACTATGGCGGGCTGACAGGCCTCAACAAGGCGGAGACAGCGGCCAAGCACGGCGAGGAGCAGGTGAAGATCTGGAGGCGCTCTTTCGACATCCCTCCCCCGCCCATGGACCAGGAGCACCCCTTCCACCAGATCATCAGCATGTCGAGGCGCTACGCTGGGCTGAAGCCGGGTGAGCTGCCCACCTGCGAGAGCCTGAAGGACACCATTGCGCGGGCCCTGCCCTTCTGGGACGAGGCCATCGTGCCCCAGATCAAGGCTGGCAAGAACGTCCTCATTGCCGCCCACGGCAACAGTCTCCGTGGCATTGTCAAACACCTGGAGGGCATGTCGGACGCTGCAATCATGGAGCTGAACCTGCCCACTGGTATCCCCATCCTGTACGAGCTGGACAAGGACCTGAAGCCCATCAAACCCATGCAGTTCCTGGGAGACCCTGAGACCGTGAAGAAAGCCATGGAGGCTGTGGCTGCCCAGGGCAAGGTCAAGAAAtaa

Function

symbol description
pgam2 Predicted to enable bisphosphoglycerate mutase activity; hydrolase activity; and phosphoglycerate mutase activity. Acts upstream of or within myoblast fusion. Is expressed in musculature system; pectoral fin; pericardial region; and pharyngeal arch 3-7 skeleton. Human ortholog(s) of this gene implicated in myoglobinuria. Orthologous to human PGAM2 (phosphoglycerate mutase 2).

NR:

description
phosphoglycerate mutase 2

GO:

id name namespace
GO:0006096 glycolytic process biological_process
GO:0004619 phosphoglycerate mutase activity molecular_function

KEGG:

id description
K01834 PGAM, gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020778 True 768 mRNA 0.63 3 32642924 32644550

Neighbor

gene id symbol gene type direction distance location
AMCG00020779 NA coding downstream 2689 32630067 ~ 32640235 (-)
AMCG00020781 NA coding downstream 18330 32619774 ~ 32624594 (-)
AMCG00020776 NA coding downstream 28967 32611491 ~ 32613957 (-)
AMCG00020780 NA coding downstream 42281 32598977 ~ 32600643 (-)
AMCG00020777 NA coding downstream 44491 32594270 ~ 32598433 (-)
AMCG00020773 NA coding upstream 24361 32668911 ~ 32674378 (-)
AMCG00020784 NA coding upstream 54649 32699199 ~ 32703449 (-)
AMCG00020785 NA coding upstream 102196 32746746 ~ 32748272 (-)
AMCG00020787 NA coding upstream 181105 32825655 ~ 32826629 (-)
AMCG00020788 NA coding upstream 317991 32962541 ~ 32980525 (-)
G65571 NA non-coding downstream 127307 32515403 ~ 32515617 (-)
G65468 NA non-coding downstream 427167 32212727 ~ 32215757 (-)
G65465 NA non-coding downstream 455213 32186482 ~ 32187711 (-)
G65397 NA non-coding downstream 581627 32058318 ~ 32061297 (-)
G65337 NA non-coding downstream 839132 31785515 ~ 31803792 (-)
G65753 NA non-coding upstream 629626 33274176 ~ 33274444 (-)
G65776 NA non-coding upstream 1161151 33805701 ~ 33852626 (-)
G65783 LOC105024168,LOC106563219,LOC104947650,LOC103362088 non-coding upstream 1187185 33831735 ~ 33835514 (-)
G65813 NA non-coding upstream 1316627 33961177 ~ 33962191 (-)
G65815 NA non-coding upstream 1337240 33981790 ~ 33982026 (-)
AMCG00020774 snrpg other downstream 32216 32607862 ~ 32610708 (-)
AMCG00020767 NA other downstream 83828 32554860 ~ 32559096 (-)
G65549 NA other downstream 277782 32358238 ~ 32365142 (-)
AMCG00020746 NA other downstream 519991 32121885 ~ 32122933 (-)
AMCG00020713 NA other downstream 1230101 31365663 ~ 31412823 (-)
G65641 NA other upstream 10584 32655134 ~ 32657019 (-)
G65679 NA other upstream 241814 32886364 ~ 32891493 (-)
G65756 NA other upstream 724075 33368625 ~ 33369105 (-)
AMCG00020810 LOC103363194,LOC101160416,LOC107087288,LOC101481896,LOC107739988,LOC102234237,LOC107675956 other upstream 1577765 34222315 ~ 34239697 (-)
AMCG00020836 snrnp27,snut3,LOC106585104 other upstream 2164054 34808604 ~ 34814294 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019504 pgam2 coding NC_007132.7 CM002905.2 19001669 ~ 19006641 (-)
grasscarp (Ctenopharyngodon idella) G45351 NA unknown CI01000006 null 8159516 ~ 8198909 (+)
mexican tetra (Astyanax mexicanus) G38239 plce1 non-coding NC_035900.1 CM008303.1 21264937 ~ 21279439 (-)