RNA id: CI01000006_09098943_09103197.mRNA


Basic Information

Item Value
RNA id CI01000006_09098943_09103197.mRNA
length 2514
RNA type mRNA
GC content 0.46
exon number 6
gene id CI01000006_09098943_09103197
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 9098682 ~ 9104172 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATAAAAGTAATATAGTATAATAGCAGAAAAGAGCACTCAAGATTTTCCATTAAACTTCTCCTACTGTAATCAAATGGAAGAAAGTACATCATATGGGTTGGGAACAACATGAGAGTGAGTAAATAATCACAGAGATTTCATTTTCATCAGTGTCACTAATCCTAAATCAGTGTAAAAACAGAAATCGATGGTGTGATGGTTGACACAGAGTACACCCTTTCTCACCTGACTCATTACTGCTACACAGGAGAAAAGCCCCATGCTTAATCGGCCACTCAAACGTTCCTGGGCCATGTTTAAGAGGTGCCACCTGGCCAAGAGAGAAGAGGGAGCAAAGCAAACAGAGAGACAAGTGGAGAGCAGAGAGGAAATGGAGCAGAGGGTTTCAGTGCCTTCTTTTGCCAGTGTTTCTGTCCACCCCCCACTGCTGGGAGAGGATAGAGAGGATAGAGGCAGAGAGAGAGCGAGAGAACTATGCCATGCTGCAGTATGCCCACAGTGTGCCAAGGACAACAGAGCAGAATTAACCCCTGAGTGGAGGCAAGAGAATAAGCCATTACGGTGGTGTGCGGAAGGGGGCCAGCAGGGTGGCGTCCTCCAGTGCCTGGGTGACAGATTGCTGCTCCGCATTGGTGGCGGAGGAGGCAAGGGCGGTTGGCGATTGGCTCTGATGGTCAGGAAGTGGGCACTGAGGGATGGCAGAGCAGGAGGAGGAAGAGGGAGCAGGGAGACAGAGAGGCCTGTTGAGGATGGCAGTGCCAGAGTAATAAGGGGAGAAGGTGTCAGAGACAGGTTAACGGTTGGCAGCAGGGGGAAATCGGCAAGATTCACACTTCTGCGGGTCAGCATCTGTCGCCATTACGGCACTACTCTCGTCGACGGCCGGTCAGCGAGCCGGAGGAACAGTAAACAACAAACCGCGTGTGACAGATTAGCGGCGCAGGCTAAAGGACCTTCCACTGACACATCATTTCTCTCACTCCGCGAGTTTGTTTCGCGGCAGCTGTCACCAATAAAACAGAGAGACAGGAGAGAAGGGGGGAGAGATGGGGGAGGTTGGCTTTTGTTCCAGATCCAGGGAGATGTAACCAATGGAAAATGCATCAACAAAACTTGTCAAGGACACTCTCCGGGCCTGAATTTTCACAGCTGCAACAATTTGGCTCTGCTTATTGGTGGGTTCACACAGGCCGCTCCAAGTGCTGTCCAATCACCAAACCCATCCATTACACTGTCCGGCTGTGGGCAGAGCCCGAGTCCCACTGTTCCCACAAGTGCCATATGGGCGGCCCGGCCTTATTGCATTAGCACAGGCGAGACAAGGGTGAGAGCAGGCCTAAGACCTGGTCCTCCCGGCTCTCCCCTAGCACTGCCACAGGGCATGCCCTGCCCACCACCAGCTGCCAGGACCAGGCAGAGAGACAGCCACAGTTCACTATCCGACAGAGGAATAGTCAGGAACCCTTTACAACTTTGCTCTTTTCTTGGACCGTTTTCTGAGGACGGAAAAAACAGTGTTTTATTGATGTTAATATAAAGGATACAACCATTTACATGTATTCATCTGCTTCAATGAAATTTCTGTCAGTAATTACTCACCCTCATGTCAGTCCAAATCCACAAGACATTGGTTTATCTTCGGAACACAAATTAAGACATTTTCAATGAAATCCGAGAGGATAGTCAAAGTGACTGCAGTGGTTCAACCTTAATGTTTTGAAGCGATGAGAATACTTTTTGTGCGCAAAAACAAAACAAAAATAACGACTTTATGCAACAATTTCTTCTCTACCCTGTCAGTCTCCTACGCAGTTGACGCAGCTGAAGCATTTCCGTGATTACGTCCAAATGCCGGCTCAGTATTGACGTGAGCACGACAACGCATGCGTGTGATGCTGACAAAGGAGCCGGGCAGTACAGAGTTAGCATTCTGATGTAAAACATGGAAGCTCTGCAATGTGTCTTCAATGTAAACTGCGTAGGAGAATGACATGGTAGAGAGGAAATTGTTGAATAAAGTCATTATTTTTGTTTTGTTTTTGCGCACAAAAAGTATTCTCTTGCTTCATAACATTAAGGTTGAACCACTGTAGTCACGTTGACTATTTTAACGATGTCTTTATTACTTTCCTGGACCTTGAATGTAGTAATTTCGTTGCTTTCTATTGGAGATAAAAAAACCTCTCAGATTTCATTAAAAATATCTTAATTTGTGTTCTGAAGATGAACGAAGGTCCTATGGGTTTGGAACGACATAAGGGTGAGTACTTAATGACAGAAATTTCATTTTGGGGTGAACTAACCCTTTAAACTTTTATCCAAAAGAAAGAAACGAGGAGAGAAGTGCTGATATACAAAGTTCCAAAACTGCTAGAACAGAGTTTCACATCGGGGTAAAACAATATACAATACAAAACAGTATAAATGGCATTATAGAGCAGTGCCCGTAAATAACATTATTTGTGCATAGCAGCCAGGGATGTTACTACACAAAAGAGTGAAGGTGAGGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52604 lncRNA upstream 3087 9095203 ~ 9095595 (+) True G46256
TU52596 lncRNA upstream 7223 9091251 ~ 9091459 (+) True G46248
TU52594 lncRNA upstream 8450 9090026 ~ 9090232 (+) True G46246
TU52073 lncRNA upstream 20020 9078441 ~ 9078662 (+) True G45796
TU52054 lncRNA upstream 44386 9053984 ~ 9054296 (+) True G45787
TU52643 lncRNA downstream 37258 9141430 ~ 9141660 (+) True G46284
TU52647 lncRNA downstream 43499 9147671 ~ 9147892 (+) True G46288
TU52658 lncRNA downstream 54405 9158577 ~ 9158906 (+) True G46296
TU52678 lncRNA downstream 85811 9189983 ~ 9197387 (+) True G46316
TU52636 lncRNA downstream 86190 9190362 ~ 9282678 (+) False G46278
CI01000006_09066050_09070383.mRNA mRNA upstream 28101 9065962 ~ 9070581 (+) True CI01000006_09066050_09070383
CI01000006_09004949_09014310.mRNA mRNA upstream 84093 9004674 ~ 9014589 (+) True CI01000006_09004949_09014310
CI01000006_08847431_08853895.mRNA mRNA upstream 244761 8846260 ~ 8853921 (+) True CI01000006_08847431_08853895
CI01000006_08757702_08765273.mRNA mRNA upstream 332620 8757419 ~ 8766062 (+) True CI01000006_08757702_08765273
CI01000006_08673737_08674685.mRNA mRNA upstream 423568 8673580 ~ 8675114 (+) True CI01000006_08673737_08674685
CI01000006_09105004_09106470.mRNA mRNA downstream 43 9104215 ~ 9106963 (+) True CI01000006_09105004_09106470
CI01000006_09107491_09114820.mRNA mRNA downstream 2654 9106826 ~ 9115071 (+) True CI01000006_09107491_09114820
CI01000006_09192219_09195918.mRNA mRNA downstream 87725 9191897 ~ 9195984 (+) True CI01000006_09192219_09195918
CI01000006_09320331_09321778.mRNA mRNA downstream 216159 9320331 ~ 9321778 (+) True CI01000006_09320331_09321778
CI01000006_09334843_09337295.mRNA mRNA downstream 230629 9334801 ~ 9337403 (+) True CI01000006_09334843_09337295
TU51632 other upstream 263985 8818814 ~ 8834697 (+) True G45416
TU51562 other upstream 886294 8209555 ~ 8212388 (+) True G45355
TU51557 other upstream 898537 8198844 ~ 8198909 (+) True G45351
TU51555 other upstream 898980 8197881 ~ 8199702 (+) False CI01000006_08198328_08199463
TU53040 other downstream 1052407 10156579 ~ 10159251 (+) False G46652
TU53607 other downstream 1381186 10485358 ~ 10511806 (+) True G47145
TU53635 other downstream 2312057 11416229 ~ 11416560 (+) False G47159
TU53639 other downstream 2312057 11416229 ~ 11521703 (+) True G47159
TU53826 other downstream 2520095 11624267 ~ 11638252 (+) True G47318

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00039239 True 241 lncRNA 0.56 2 NC_007132.7 17433601 ~ 17437768 (-)