RNA id: CI01000006_09105004_09106470.mRNA



Basic Information


Item Value
RNA id CI01000006_09105004_09106470.mRNA
length 1585
RNA type mRNA
GC content 0.40
exon number 2
gene id CI01000006_09105004_09106470
representative True

Chromosome Information


Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 9104215 ~ 9106963 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTATAAATAGGCCCTTGATTGTACTATATTCAGCATCCCCATGCCGGCAAGTCTTAGAAAGAAAAAAAAAAAAAAAACCAAGCACTTACAGTCCCCAAAGTAAAGATTGCTTGCCACTGGAGATATCTGAACAGGTCTTCCACCTGGACTGGGGACAGAAGAAGGGAGAGAGTTCAGATGTTCAGATGTTCTGAGGATCGCATGGGAATGTCAGACTGTGTTTCAGCCTGTACCTGCCACAGGACCTGAGGCCTGTTTTAATTAATCATAAAGGGCTATGAATTATTAATCTATTATCACTGCGCATACATGTGATCATTCATTTGTCTCTTCTGCTGTTTTTAGCACCCTTAAGTCCCTGTTTCTGTTAATATGCCGCAATTCTGAGGAGAACTAAGGGTAGCTTAACCTGACGGCACAATTTAATACAGTACAAAACTACTTAGATGTTCTTATTTCACAAACTCTCCAGTGAGAGTGTATACAAACAGAACAAACAGGTCAACTCTTCGTTGTTGGAAGTAGGTGAAGCGCGGAGACTCCCAATAAACCCAAATATTACATTTGAAAACATTTACATTTGCACAGTACTTACATTTGCAATGATAAGCAATCACACGTAGCACTCCCGGAAAAACTTGTTTTCTCGAAAAGTTTGCAACGCTCAATGACATATTTAAGCAAGGACTCTTCAAGCAGCGCCCGGGGTGTTTTTGTGCCACACTGATCAGACATCATTGAGCTCTCATTGAGGAGAGATTTGGCTTTGGCCTGACTGTGTGGCCTGTGATGACTGACAGTAGGAAGGAAGGTTTCTCCTACCCACGGGCGCCCCATCGAAGCTTCAGCTCAGGAGGACACAACAGATCTGAGCGAGAGCAACACCTGTCAGAGGAAACCTTCACATTGCTAAATACTTTTGACAACTCAGTTTCTTTGCGTCTTGTGAGTGGAGTCTTTGCCAAAGACTGCAATTCAGAAAGGAAAGAGGACACACTGCTCCTTTTCAACCCTTTCCAGGTGGGAATACTAGACAGATCAAAGCTTGTGGCTGTTAATTACACATATCCTGCAACTTGGTCACACAGTTAGGGCTCCTGACCGTTCTCATATGCTCCCAACCAATTAATGATCTTTCTCCTGTCTCTCTGACATCAGATGAATAGTGTCTGAGTTTTCAGCTGATGGATTATGTCAGCGTATCAAATGACAAATGCTTCACAATTTAGAATGACATCTGTAATTTAAACACTTAGCACAGCTGAGACTGGCTCTCTGCCCAATATTAAGAATATTAAAAAACATTAAGTTGATGATATATTGTGTGTAGAGATACCTACAATATATGACTCAAAAACAGGTTTGTTGAGGATAAGAGGGGTGTTGTAACACTTTTTTTTAACACCTGTACCTCAAACTTTGATTTAAAAATTCTCATATTTATCTGCTATAAATTATAGCATTTTGGAATGATCATTTCATATCATTACCATCACCACTACCCTCCCTCATTTAATTTTATTTAAAAATGGTAAATATATAGCACACATTGTGGTAATGTGGTAAAATACAGGATATATTAATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU52617 lncRNA upstream 1759 9102035 ~ 9102456 (+) True G46267
TU52604 lncRNA upstream 8620 9095203 ~ 9095595 (+) True G46256
TU52596 lncRNA upstream 12756 9091251 ~ 9091459 (+) True G46248
TU52594 lncRNA upstream 13983 9090026 ~ 9090232 (+) True G46246
TU52073 lncRNA upstream 25553 9078441 ~ 9078662 (+) True G45796
TU52643 lncRNA downstream 34467 9141430 ~ 9141660 (+) True G46284
TU52647 lncRNA downstream 40708 9147671 ~ 9147892 (+) True G46288
TU52658 lncRNA downstream 51614 9158577 ~ 9158906 (+) True G46296
TU52678 lncRNA downstream 83020 9189983 ~ 9197387 (+) True G46316
TU52636 lncRNA downstream 83399 9190362 ~ 9282678 (+) False G46278
CI01000006_09098943_09103197.mRNA mRNA upstream 43 9098682 ~ 9104172 (+) True CI01000006_09098943_09103197
CI01000006_09066050_09070383.mRNA mRNA upstream 33634 9065962 ~ 9070581 (+) True CI01000006_09066050_09070383
CI01000006_09004949_09014310.mRNA mRNA upstream 89626 9004674 ~ 9014589 (+) True CI01000006_09004949_09014310
CI01000006_08847431_08853895.mRNA mRNA upstream 250294 8846260 ~ 8853921 (+) True CI01000006_08847431_08853895
CI01000006_08757702_08765273.mRNA mRNA upstream 338153 8757419 ~ 8766062 (+) True CI01000006_08757702_08765273
CI01000006_09192219_09195918.mRNA mRNA downstream 84934 9191897 ~ 9195984 (+) True CI01000006_09192219_09195918
CI01000006_09320331_09321778.mRNA mRNA downstream 213368 9320331 ~ 9321778 (+) True CI01000006_09320331_09321778
CI01000006_09334843_09337295.mRNA mRNA downstream 227838 9334801 ~ 9337403 (+) True CI01000006_09334843_09337295
CI01000006_09497508_09511925.mRNA mRNA downstream 389843 9496806 ~ 9512720 (+) True CI01000006_09497508_09511925
CI01000006_09569228_09574340.mRNA mRNA downstream 461317 9568280 ~ 9575061 (+) True CI01000006_09569228_09574340
TU51632 other upstream 269518 8818814 ~ 8834697 (+) True G45416
TU51562 other upstream 891827 8209555 ~ 8212388 (+) True G45355
TU51557 other upstream 904070 8198844 ~ 8198909 (+) True G45351
TU51555 other upstream 904513 8197881 ~ 8199702 (+) False CI01000006_08198328_08199463
TU53040 other downstream 1049616 10156579 ~ 10159251 (+) False G46652
TU53607 other downstream 1378395 10485358 ~ 10511806 (+) True G47145
TU53635 other downstream 2309266 11416229 ~ 11416560 (+) False G47159
TU53639 other downstream 2309266 11416229 ~ 11521703 (+) True G47159
TU53826 other downstream 2517304 11624267 ~ 11638252 (+) True G47318

Expression Profile