CI01000006_08366730_08400944


Basic Information

Item Value
gene id CI01000006_08366730_08400944
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 8366090 ~ 8402325 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_08366730_08400944.mRNA
CTATAAAAAGTAGCATTCATCTTACCTGTTTTGATTTGCAGAAGATTGGCTGTTGCTTGGTCAGAAATTCTGGCATTCAAATCTAATTCGTGCGATATGTCAAACTTCAAACTGCAGGACAAAACTCTCTCATGGGAACCGTTTAAAAGTAGCCCAATTCCATGGGGAAAGCTGCAACCTTGTTAACTCTGAACAATGTGTTAGAGAAAAAGAGTCTTTCTTTCTGAAATTTGTGTGTAGTGTCAACCAAAGAGCATAAATTATAATTTTTTTCCCCTTAAATAATGAAGTGACAGCATTGAGAATTGCATGGTGACCTTCCTTTTTACATGGATGTGTGAGTTATTTGAAGAGGGACCTTGTATCATACTGTTCTGGTTCTGGGAAAAAACATTCTGAGAAAAAGAATATAGTTTATTTTTTTCTGTTCCTGTCATGCTACCAGGTGCGAATTCAATTGCAGTTCCATATTCCACATTTGTATTTTGATATTAGGAATTTTTCATATGCCTTTTTGTTTTAACTAAGTACTGTGAGGCCGGAGCAGCCAGGCTGATCAAACCCAGGCCCGGGCAAATCAAATGGCTTTGGTTTTATTCATTGTTTTTCAGCTTTGTTTGCATTGCAATCAGTGGAGACAATGTTATGCTCCGCTTTGGAAATCTTTTCTGAAAATGCTATGGCACTGGACCAAAAGGTGGAGGCCGGTTTCCAGAAGGTTCTACAGGTGGATCTGGAGGTCAACGGGTTGTTGGATCCTCTGGGAAGTCGCTCAGTGACATGGCAGATTGAGTACCCCATCTCCCGGACCCTCTCAGACGAGATCCAGACCCTCATCCGTCTGGCACCACATGACCTTGGCGGCATCGTGCCATTGGCTATGGATTTGTTTTGTTTGGTTCTTGGTAGCCTCTTGGCCTTAGTCTTGAGTTTCGTGGCTGCAGAGAGGTGCTTGGCTGACCCAGTGGCTGTAATGTGTTCAACGGCAGCTAAGCTTCATCTCTTTGCACTATTACTGAAATCAATAGCCATCTTCCTCTTTGCTCCCTGTTTGTCTGCACTGTTGTACCATTATATCGGAGGCTCTGTCAGCAAGACTCTCAAAGGCAAAAAGGCTTCAGCCGTTGCTGCTGAAGAGCTGGGAGGACCCGCGGTCTTGAAAAGAAATACAGCCATCGATCGATGGCTCTGTAATAGCATAGCTGCGGCATCAGCTGGGAGGATCCACATGGGGTGCCGATGCATTCAGCGCTGCCTGTCCTTGAGCGTTAGACCCTGTGAGACAGAGATCCTTAACACCGCAGTGCTCACCGGGAAGACTGTTGCCATGCCAGTTAAAGTGGTCACCGTTGGAACCGAAGGTACTGTGACCGATGTGACCGAGTCGGTGGAATGTCGCTCGACGGATGAGGACGTGGTTAAGAGATGGACAGGCAGAAAGGGACAGCGCTTGCGTCAGGCAGCAAAGTCCAGTCTCTCTGTGTGCCTGTCTGAATGGGTCATTAAGTACCCAACTCAGTTCCCTGCGGGGATCTCGACGTCCTCTGTGTCCGAAAGGTGCGATTATGTGTACGTCAACGGAAAGGAGACGCGTGGGAGAGTGCGGATGATGGTGAACTTTACCTACAGTTACCTAAGCGCTCAGCTGGAGGTGAGCGTGTGGATGCCTCGACTCCCCCTGCAGATCGAGATGTCTGATCCAGAGCTCAGCCAGATCAGGGGCTGGAGAGTTCCTACAGATGCTGCCAGCCAGAGCTGTTCTCATGCTCTGGTGTTCCTTGGTAACACAAGGCGAGTAGCAGAGCTCCCTCTGGAACACATGATGGAGTGTTTCAACCTAGTGTTTTTCCTTAGAAAGTTTGGAGAGGATGACGGGGATGAAGGAGCCAAGAAGGACCGGAGCTGTGGTCCACAGTACCAGAGCACCACCGTCCGTGTCCTCACACACTTTGAGGCTGAGCCAGAGGAGTGGCAGGGCCAGCCAGACTTCCTCTTGGGCAGTGATTGGCAGGTGGACGTGACAGAGCTGGTGAGGGACTCGTTAAGGGTGGGGGATGAACGCGTGGCCAAGCTGTCAGAGGAACAGGTTCTGATCGGTCTGAACACCGGCACCACCAAAGTTCAGGTGATGTCCCCATTGTCAGACTCAGTTCTGGCTGAGAGGACGATCCGGGTTCTGGATGATAAAGTCAGTATAACAGAGCTGGGTGTGCAGCTGGTCTCTGGCCTTTCCTTGAACCTTCAACTCAGCCCAGGAAGCAACAGGGCCATCATTGCCACGGCTACCACACAGGAGACCATGCACAATGCTAATCAGGAGTCCCTTGTCAGTGCGTGGCTTCAGTTCAGCGATGGCTCCATGACCCCTCTTGACCTCTATAACCCTGCACATTTCATCCTAACAGCCACCTCGCTGGACGACAAGGTGGTATTGGTGAGAAAAAGCACCACCTGGAGGTGGCCGGTGGTGGTGGCTAAGGGTGAAGGGCAAGGCATGTTGGTCCGCCTGGAGATGTATGGACCCGAATCGTGCCTAAAAACCAAGCGCCGCACACTTCTGGCAGCAGGCAACGCGAACGTCTATGTGAAGTTCGGCCGTGGCGATGAAACGGGAAACAGTGCGAGCGACAGGAGATACAGGCCCAATGCTCCATACTACGGAGGTTCAATCTCAGACATGGAGGCTGGAATCATGAACCGAGGTGCTACCACCATCAAAACCTCCATTCCAGGGAAAGCAAGCGGTGACAGGCTCTCAGCTGGTGATATTCCGGTTGATTTCTCTGAATTCCCAGCTCAAGGAGACCTTCCACCTGGACATAACACAGAGGATGACTTAATGCAGACTCGCCGTGGGCTCACAGATCTGGAAATAGGCATGTACGCCCTGCTAGGTGTCTTCTGCTTGGCCATCCTGGTATTCCTAATCAATTGCGTGTCCTATGCCCTTAAGTATCGCAACAAGCAGCTCCCATTGGAGGGCCAGGAGACCATGGCTCACGCCCACGACTGGGTCTGGTTGGGCCATGATGCAGAGCTATTGGAAAGCCAAGCGGGTTTGTGTCTTGATCAAGAGGAGCTAGGCGGAACCATGGACTCCGGGCTGGGCCTGGAAGAGGGTAGCCAGCTCCTCAATGGCCTTTCCTCTCAGAAGAGTGTGCAAGGCCAGGTCCACAGGTCGGCCTCTGACTCGGGGTGCACTGGGAGAGATCACAAGAGCGAGTCCATAAACTCACCCACTACCAAACGGAAACGAGTCAAATTCACCACTTTCAGCCATAGCAAGCCCAGCAATGGCTGCCCCTCCATAAGCCCTCTTCTCATTGGTCAGAACGACATCAAATGGGTTTGCCCAGACATCGAGCTCGGGGACTCCAAAGAGCTCCGAAATTACATGGAAAGGTTAAATGAAAATGCTACTAAGAACATCGCATAGTGGGCTTGAATTTATTTATGTATTTTTCAGACAAAAGCGTAGCTCACCCATATGCCTTCTGGATAAGGTGGTGGTTGGTGGTGGTTGGTGGTGGTTGGTGGCGGTCGGGTGGGAGGGGGGGAGGTTGGCCTGACTCTACTGCACTCAGACAAACTCACATCTCACCATGAAAAGGCAAGCCATTCATCTGGTCTTGTTTCCATGGCAACTGTCATGAGGGTTCATCATCAGGAAAGAAGGAAAACAGAGATGGTTGTGAAACCGCTGAGAATGTGAGAACATTGGATTATGAGAAATGTTTCAATTGAGATGTCTATATTTTCTTTTTTTCCAAGAAGAGGATATTCCATTCTATTTTGAAATATATATATAAATATATATTTGTTTTTTTCTTTTCTTTTTCCTTTTTTTTAATTTATCACACTAAAGCCTGGTTAGTGGTGTTATCTTTTAGTGAGTGAATATCTCAAAAACACTAAGAGCTGACATTCAAACATATCAGTGGCACGCTGGAAAGCGAAGCATTTCCACAAGTTGAACATTGACTGGCTCTGACGATGAGTGAGAACACCTTTTGTAGGGTTTTACATATTTTTATACATCTCTATTCCTGTCCGTGTTAGTGCGTCTACTGTATTTCTCAAAAGACTGACTCCCATATGTAAGAGCATGTGAATTCAAAGTATGGACAAAAAATGTCTATTTTGGAACTTTTTCCACCAACAGTTTGAATGAACATGTATATACAGAGGAAGACTTCTGGGAAAACAGGCAGATCAATGACCCTCCACGTCTCTTTGAGAGCTGTTGAGCAAATTGTATTGTTGTAGGTAGTGTTATCAATATTGTATAATATGTTGTTTACAGTATTAGAATGATAGGTGGTATGCACTCCAATTGCTTATGTATGTGTGCTATAGCTATAGCATTTTGTTTTCTTTTGATGTTTGTTTGTTTCTTTTGTTCCATTCTGCTTAGTTTTTCCCCTTACAGTGATTGCAGTATAGAACAAGAAATATCTAACCTTCCTAAATGAATGTTCCACAGATTAGCCAAATAATTAGGCTAAATTTAACAAGATCTGATGAGTTTGGGACTGCAATCCTGAGATAATGTGATCGATGCAGCGGAGAGACATACATACTTTGTTAAGAAAACCACAGAACAGTTATATGTGAACAAATTGATTAGTCAAACACTCAGTCTACATTTGTGAACCATTTCTAACCATCATAAAGGACGTAATCAATACTCAATTACCCTTAACACAATTTATTTCATAAACAATTCTTAAAGATAGCGTGTGCCAACTAATTCCCCATCCAGGTGTGTTGGCATGAGAGTCGATGCAAATGTCTAATTTAAGACTGTATTAATTAGA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_08366730_08400944.mRNA True 4817 mRNA 0.47 12 8366090 8402325

Neighbor

gene id symbol gene type direction distance location
CI01000006_08305571_08341681 NA coding upstream 24409 8305571 ~ 8341681 (+)
CI01000006_08222787_08225568 MED15 coding upstream 140522 8222787 ~ 8225568 (+)
CI01000006_08198328_08199463 NA coding upstream 166424 8197881 ~ 8200145 (+)
CI01000006_08184916_08188512 NEFMA coding upstream 176791 8184799 ~ 8189299 (+)
CI01000006_08108713_08122179 NA coding upstream 243726 8108563 ~ 8122364 (+)
CI01000006_08528828_08531392 NA coding downstream 126503 8528828 ~ 8531457 (+)
CI01000006_08673737_08674685 NA coding downstream 271255 8673580 ~ 8675114 (+)
CI01000006_08757702_08765273 WDR5, WDR5B, WDR5.L, BRAFLDRAFT_281422 coding downstream 355094 8757419 ~ 8766062 (+)
CI01000006_08847431_08853895 NA coding downstream 443935 8846260 ~ 8853921 (+)
CI01000006_09004949_09014310 GSNA, GSN coding downstream 602349 9004674 ~ 9014589 (+)
G45438 NA non-coding upstream 32612 8332579 ~ 8333478 (+)
G45359 NA non-coding upstream 127684 8234738 ~ 8238406 (+)
G45392 NA non-coding upstream 206623 8159245 ~ 8159467 (+)
G45391 NA non-coding upstream 207197 8158636 ~ 8158893 (+)
G45356 NA non-coding upstream 208555 8154796 ~ 8157535 (+)
G45528 NA non-coding downstream 170369 8572694 ~ 8574744 (+)
G45543 NA non-coding downstream 280656 8682981 ~ 8739598 (+)
G45630 NA non-coding downstream 303008 8705333 ~ 8705667 (+)
G45413 NA non-coding downstream 347586 8749911 ~ 8750496 (+)
G45734 NA non-coding downstream 521505 8923830 ~ 8924046 (+)
G45355 NA other upstream 153702 8209555 ~ 8212388 (+)
G45336 NA other upstream 344139 8019342 ~ 8021951 (+)
G45265 NA other upstream 445735 7883867 ~ 7920355 (+)
G45178 NA other upstream 682419 7607604 ~ 7683671 (+)
G45416 NA other downstream 416489 8818814 ~ 8834697 (+)
G46652 NA other downstream 1754254 10156579 ~ 10159251 (+)
G47145 NA other downstream 2083033 10485358 ~ 10511806 (+)
G47159 NA other downstream 3013904 11416229 ~ 11521703 (+)
G47318 NA other downstream 3221942 11624267 ~ 11638252 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location