RNA id: CI01000006_09910027_09913958.mRNA



Basic Information


Item Value
RNA id CI01000006_09910027_09913958.mRNA
length 3209
RNA type mRNA
GC content 0.39
exon number 8
gene id CI01000006_09910027_09913958
representative True

Chromosome Information


Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 9909370 ~ 9914104 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTATAAATATAAAGGTGACAAACTACCACTAAAACAGCAAGCAAGAGAACAGACAAGACTACACATCCAAAGGTAAACTGAACAACTGTTGAAAATGGTTTTTCATCTTGGAATTTAAAACTTTACAGTAATCATAAAAATGCAAATAAATAAATATTAAATAATAATAACACATACCTGCAAACTAGTCACTTTTCGGTTACGTTTCATTTTGAATCAAAATATGTAATTTATGTGAATTGTGTGTAGATCTGAAGATTTTTAATGGGTTACTTTCTCATAGACTGGTTAGAACTTTAAGTACCATTTACTAGTTACAACACAAAATAAACATGAATGAACATCCGAAGGTATGTTCATTCAGTAGGCCTACAACTTACCAAAATCCGTATCGTCACATGTAATCGATCATGTAATCAGTGTTTCAACTGCAGAAAGGCGTCAACAGGTTATCAAAATCAGGCGAAATCAAATCGCAAGCTTCTGAATCGAAATCTGGGGGAGGATGCCTCCAGACCCCCTACAACAATTTACCTCTTAAACATGTCACCTTTTTTTTTTTTTTTTTTTTTTTACCTCTTTTGAGTTTGCAGATCTGATAACAATAAATGTAATACATTTTAAAGTGCATAATGTTTTTTTTTTCATTCAGTAGATATGTTTCTGCTTCTGTTATCGGGATTTATCAGCTTCGGCTTGAGTGTCCCTCGTCATTATGTCTTTGTGAATGAATCCAAGACTTGGGCAGAAGCTCAGAGATACTGTAGAGATAAATACTCTGATCTGGCCACTATTGAAAATGAACAACAGACAGTTCAGTTATTGGACACAGTTAAAGATGATTCCATTGATTTGGCCTGGATTGGACTCTATGATGATCTGAACAGTTGGAAATGGACTCTAGAGGACAGTGATTTCTTCAATGATTTTTATCAGGAAGGAGAGAGAGATTACAGGAACTTCAATAATCAACCGGACAACAGTGGTGGGAATGAACTGTGTGTTTACATGGATTATGATGGCAAATGGTATGATATGTCATGTGACAACACGCTGCCATTCATTTGCTATGATGGTAAAGAAAATGTCACACAGAGTTACATCAGAATCTATGACTGGAAAACCTGGTCAGAGGCTCGTAGATACTGCAGAGAGAATTACACAGATCTCGCCAATGTGAGAAATCAGACTGAGAACCAGAGGATCCTTGATAGAACAGGTGGAGGAGGCTGGATCGGACTGTACAGAAACAGGGTTTGGTCTGACCAACAAATTGCCAGTTATGAAAACTGGAAACCAGGCATTCCTTATTCACCACAGCAACCAGATAATGATTATGGGGAGTGGGATTCACCTCACTGTACTGCTGTTTCACTCAAAGATGCAGGCCGATGGACCGATGAGAACTGCTTTTTCAGCATCCCTTTCTTCTGCTACAACAAGAATAATCTGATTTTTCTCTGGTATTTTCTAAAATGGAAAGGAACCTGCACACAATCTTCATGCACCTGTCAGTATCACTTTGTATCTGAGAATAAGACCTGGTTTGAAGCTCAGAGATACTGCAGACAGAATTACACTGATCTGGCCACCATTGATAACATGGAGGAAATGAACAGACTGATCAACACAGTTAATGGGAGTTACAATGGTTCAGCCTGGATTGGACTGTATGGTGATGTCAACAGCTGGAGATGGTCTCTGGATAATGCAGTGTTAGGAGTTCATAAAAGGTGGCTTGGCCAACATCCAAGGAACACAGGTGGACAGAGTCTGTGTGTGAATATGAACACACACAATGGTTTATGGAGTGAAGCTCCATGCTCCAACTTGTCTCCTTTTGTTTGCTACGATGGAAGAGAAAATGTCAGTACAAATTATGTGTATGTTAACCAATTAAAAACCTGGACTGAAGCTCAGAGTTACTGCAGAGAGCATCACACAGACCTCATCAGTATCAGGAATGAGAATGAAAACCATGAGTTCCAGTATTTGTTCAAGAGTGACTTTTATTACTATTTTTGGATTGGACTGACCAGAACCAGATCTTGGTCAGATCAGAGCAACTCTTCATTCAGTAACTGGAGGACAGGACAGCCAGATAATGCTGGAAACAGAGAATACTGCACTGCAGTGTCATTTAGTGACTCTGGGAGCTGGACAGATGAAAACTGCGATACTGCATTTCCATTCATTTGCTACAGTGTGTCATCTTTGACATCATCCCGTCAGTATCACTTTGTGAATGAGAATAAGACCTGGACTGAAGCTCAGAGATACTGCAGACAGAATTACACTGATCTGGCCACCATTGATAACATGGAGGAAATGAACAGTCTGATCAACACAGTTAATGGGAGTTACAGCGGCTCAGCCTGGATTGGACTGTATGATGATGTGAACAGCTGGAGATGGTCATTGGAAGACAATGATTTCTATCAAGAAGGAGAGAGAGATTTCAGGAACTGGTATTATCCACCGAGTAACTTTGTTGGAAAAGAAATTTGTGTTTTCATGTATTGGGATGTCTGGTTTAAAGTGCCATGTGACAGTCCTGTGGCATTTGTTTGCTATGATGGTAGAGAAAACGCCTCTCAGAAGTTTATCTGGGAAGGTACTGGAAGGACCTGGACTGAAGCTCAGAGATACTGCAGAGAGAAATACACAGACCTGGCCAGTATGAGAGATGAGACAGAAAGTAGAGAGGTACTGAGTGTCTCACTTGGAAATGTTGTATGGATTGGTCTGCACAGAAACAGACTGTGGTCAGATCAGAGCAACTCTTCCTTCACATATTGGAGACAAAAGGTCAGTTTTGAAGCTGCACAGCCAGATAATGGTTTTTACACACCAGGACAGAATGGTACTCAACACTGCACAGCTGTGTCTTTACAACATTCTGGCCAGTGGACAGATGAGCAATGCTTGGACAGTTTGCCTTTCTTCTGCTATAGTGGTTATACGATGGGGTTGAGAGTGGAATTCACAAGTGTGGAAAGTTTGTCAAAGTCTCAGATTGAAGACTTTGTGATTATACAAGTAAGTACCTGGATGTTAATATAAAACACTCAATTACAGTTTTTTTTTTTTTTTTTTTTTTTACAAATCTCACAATCTCACAAATACAAAACAAATCACATTTCAGCTCCAAAAAGAATTTATAAGACGGGGACTTCCCAGCAACTTCACCATGCATTTGAGGAAGGAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU52947 lncRNA upstream 52275 9856747 ~ 9857095 (+) True G46569
TU52943 lncRNA upstream 57536 9851629 ~ 9851834 (+) True G46566
TU52942 lncRNA upstream 57912 9851135 ~ 9851458 (+) True G46565
TU52898 lncRNA upstream 63163 9840098 ~ 9846207 (+) True CI01000006_09836923_09844045
TU52903 lncRNA upstream 79796 9819361 ~ 9829574 (+) True G46526
TU53056 lncRNA downstream 72810 9986914 ~ 9987133 (+) True G46662
TU53059 lncRNA downstream 74877 9988981 ~ 9989253 (+) True G46665
TU53065 lncRNA downstream 79639 9993743 ~ 9994022 (+) True G46671
TU53071 lncRNA downstream 98786 10012890 ~ 10013116 (+) True G46677
TU53076 lncRNA downstream 102246 10016350 ~ 10017401 (+) False G46680
CI01000006_09891107_09897750.mRNA mRNA upstream 11607 9891107 ~ 9897763 (+) True CI01000006_09891107_09897750
CI01000006_09884959_09889794.mRNA mRNA upstream 19081 9884439 ~ 9890289 (+) True CI01000006_09884959_09889794
CI01000006_09836923_09844045.mRNA mRNA upstream 65022 9836923 ~ 9844348 (+) False CI01000006_09836923_09844045
CI01000006_09712289_09783579.mRNA mRNA upstream 125791 9712289 ~ 9783579 (+) True CI01000006_09712289_09783579
CI01000006_09569228_09574340.mRNA mRNA upstream 334309 9568280 ~ 9575061 (+) True CI01000006_09569228_09574340
CI01000006_09918611_09921465.mRNA mRNA downstream 4507 9918611 ~ 9921793 (+) True CI01000006_09918611_09921465
CI01000006_09998680_10008491.mRNA mRNA downstream 84576 9998680 ~ 10009048 (+) True CI01000006_09998680_10008491
CI01000006_10177090_10192651.mRNA mRNA downstream 262986 10177090 ~ 10193519 (+) True CI01000006_10177090_10192651
CI01000006_10363884_10364804.mRNA mRNA downstream 449692 10363796 ~ 10365571 (+) True CI01000006_10363884_10364804
CI01000006_10518326_10566504.mRNA mRNA downstream 604222 10518326 ~ 10566504 (+) True CI01000006_10518326_10566504
TU51632 other upstream 1074673 8818814 ~ 8834697 (+) True G45416
TU51562 other upstream 1696982 8209555 ~ 8212388 (+) True G45355
TU51557 other upstream 1709225 8198844 ~ 8198909 (+) True G45351
TU51555 other upstream 1709668 8197881 ~ 8199702 (+) False CI01000006_08198328_08199463
TU53040 other downstream 242475 10156579 ~ 10159251 (+) False G46652
TU53607 other downstream 571254 10485358 ~ 10511806 (+) True G47145
TU53635 other downstream 1502125 11416229 ~ 11416560 (+) False G47159
TU53639 other downstream 1502125 11416229 ~ 11521703 (+) True G47159
TU53826 other downstream 1710163 11624267 ~ 11638252 (+) True G47318

Expression Profile