RNA id: TU53071


Basic Information

Item Value
RNA id TU53071
length 227
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G46677
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 10012890 ~ 10013116 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCATTCTAACATGCATTTCACATGTATTTGCTTTCATGCCCAACATGTTTTCAAGGTTATGACTCTTATTACTCATGCATTTAGAGACTTGCAGGTCCCCCCTCCTTTCCCATTCCTTGTCTCAGTGGGCTCAGGTGGGCCTGCGGAGGACCACGCAGGCCCCAATTTTCCCCCTGACTGGTTTTAACATAAGGGGTAATGTGAGAGGAGCAGGCACGGGCTCTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53065 lncRNA upstream 18868 9993743 ~ 9994022 (+) True G46671
TU53059 lncRNA upstream 23637 9988981 ~ 9989253 (+) True G46665
TU53056 lncRNA upstream 25757 9986914 ~ 9987133 (+) True G46662
TU52947 lncRNA upstream 155795 9856747 ~ 9857095 (+) True G46569
TU52943 lncRNA upstream 161056 9851629 ~ 9851834 (+) True G46566
TU53076 lncRNA downstream 3234 10016350 ~ 10017401 (+) False G46680
TU53075 lncRNA downstream 3277 10016393 ~ 10017401 (+) True G46680
TU53080 lncRNA downstream 4308 10017424 ~ 10017848 (+) False G46681
TU53081 lncRNA downstream 4308 10017424 ~ 10018083 (+) False G46681
TU53078 lncRNA downstream 4467 10017583 ~ 10017848 (+) False G46681
CI01000006_09998680_10008491.mRNA mRNA upstream 3842 9998680 ~ 10009048 (+) True CI01000006_09998680_10008491
CI01000006_09918611_09921465.mRNA mRNA upstream 91097 9918611 ~ 9921793 (+) True CI01000006_09918611_09921465
CI01000006_09910027_09913958.mRNA mRNA upstream 98786 9909370 ~ 9914104 (+) True CI01000006_09910027_09913958
CI01000006_09891107_09897750.mRNA mRNA upstream 115127 9891107 ~ 9897763 (+) True CI01000006_09891107_09897750
CI01000006_09884959_09889794.mRNA mRNA upstream 122601 9884439 ~ 9890289 (+) True CI01000006_09884959_09889794
CI01000006_10177090_10192651.mRNA mRNA downstream 163974 10177090 ~ 10193519 (+) True CI01000006_10177090_10192651
CI01000006_10363884_10364804.mRNA mRNA downstream 350680 10363796 ~ 10365571 (+) True CI01000006_10363884_10364804
CI01000006_10518326_10566504.mRNA mRNA downstream 505210 10518326 ~ 10566504 (+) True CI01000006_10518326_10566504
CI01000006_10574971_10578629.mRNA mRNA downstream 561492 10574608 ~ 10578964 (+) True CI01000006_10574971_10578629
CI01000006_10593624_10605226.mRNA mRNA downstream 580128 10593244 ~ 10606273 (+) True CI01000006_10593624_10605226
TU51632 other upstream 1178193 8818814 ~ 8834697 (+) True G45416
TU51562 other upstream 1800502 8209555 ~ 8212388 (+) True G45355
TU51557 other upstream 1812745 8198844 ~ 8198909 (+) True G45351
TU51555 other upstream 1813188 8197881 ~ 8199702 (+) False CI01000006_08198328_08199463
TU53040 other downstream 143463 10156579 ~ 10159251 (+) False G46652
TU53607 other downstream 472242 10485358 ~ 10511806 (+) True G47145
TU53635 other downstream 1403113 11416229 ~ 11416560 (+) False G47159
TU53639 other downstream 1403113 11416229 ~ 11521703 (+) True G47159
TU53826 other downstream 1611151 11624267 ~ 11638252 (+) True G47318

Expression Profile