RNA id: TU53078


Basic Information

Item Value
RNA id TU53078
length 266
lncRNA type intronic
GC content 0.38
exon number 1
gene id G46681
representative False

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 10017424 ~ 10018083 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAAAAAAATAACGACTTTATTCAACAATATGTAGTGATGGGCGATTTCAAAACACTGCTTCATGAAGCTTCGGAGCTTTACGGATCTTTTGTTTCGAATCAGTGGTTCAGAACGCCAAAATCGCGTGATTTCAGTAAACGAGGCTTCGTTACGTCATAAGTGTTTCGGATTTTCAATAGTACATGACTTTGGCAGTTTGATACACGCTCCATACCACTGATTCGAGACAAAAGATTCGTAAAGCTTCATGAAGCAGTGTTTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53076 lncRNA upstream 182 10016350 ~ 10017401 (+) False G46680
TU53075 lncRNA upstream 182 10016393 ~ 10017401 (+) True G46680
TU53071 lncRNA upstream 4467 10012890 ~ 10013116 (+) True G46677
TU53065 lncRNA upstream 23561 9993743 ~ 9994022 (+) True G46671
TU53059 lncRNA upstream 28330 9988981 ~ 9989253 (+) True G46665
TU53090 lncRNA downstream 13963 10031811 ~ 10042271 (+) True G46690
TU53106 lncRNA downstream 68529 10086377 ~ 10086976 (+) False G46704
TU53105 lncRNA downstream 68892 10086740 ~ 10086976 (+) True G46704
TU53108 lncRNA downstream 69690 10087538 ~ 10088024 (+) True G46705
TU53109 lncRNA downstream 70781 10088629 ~ 10088834 (+) True G46706
CI01000006_09998680_10008491.mRNA mRNA upstream 8535 9998680 ~ 10009048 (+) True CI01000006_09998680_10008491
CI01000006_09918611_09921465.mRNA mRNA upstream 95790 9918611 ~ 9921793 (+) True CI01000006_09918611_09921465
CI01000006_09910027_09913958.mRNA mRNA upstream 103479 9909370 ~ 9914104 (+) True CI01000006_09910027_09913958
CI01000006_09891107_09897750.mRNA mRNA upstream 119820 9891107 ~ 9897763 (+) True CI01000006_09891107_09897750
CI01000006_09884959_09889794.mRNA mRNA upstream 127294 9884439 ~ 9890289 (+) True CI01000006_09884959_09889794
CI01000006_10177090_10192651.mRNA mRNA downstream 159242 10177090 ~ 10193519 (+) True CI01000006_10177090_10192651
CI01000006_10363884_10364804.mRNA mRNA downstream 345948 10363796 ~ 10365571 (+) True CI01000006_10363884_10364804
CI01000006_10518326_10566504.mRNA mRNA downstream 500478 10518326 ~ 10566504 (+) True CI01000006_10518326_10566504
CI01000006_10574971_10578629.mRNA mRNA downstream 556760 10574608 ~ 10578964 (+) True CI01000006_10574971_10578629
CI01000006_10593624_10605226.mRNA mRNA downstream 575396 10593244 ~ 10606273 (+) True CI01000006_10593624_10605226
TU51632 other upstream 1182886 8818814 ~ 8834697 (+) True G45416
TU51562 other upstream 1805195 8209555 ~ 8212388 (+) True G45355
TU51557 other upstream 1817438 8198844 ~ 8198909 (+) True G45351
TU51555 other upstream 1817881 8197881 ~ 8199702 (+) False CI01000006_08198328_08199463
TU53040 other downstream 138731 10156579 ~ 10159251 (+) False G46652
TU53607 other downstream 467510 10485358 ~ 10511806 (+) True G47145
TU53635 other downstream 1398381 11416229 ~ 11416560 (+) False G47159
TU53639 other downstream 1398381 11416229 ~ 11521703 (+) True G47159
TU53826 other downstream 1606419 11624267 ~ 11638252 (+) True G47318

Expression Profile