G46705


Basic Information

Item Value
gene id G46705
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 10087538 ~ 10088024 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU53108
CACACACAAACTGTTGTTTAGAAACAATTTCTGACTAAAACTGGCTAAAAAAGACACTGAACAATTAAAACAAAATACCAAAATAAAGCCTTTATTGAAGGAACTGCTGCAAATGGTTACATAATGCCGGCAGTAGGTTTACTCACGAACAGAACAAAATGTAGAACATACAAAAAGAAAAAAGAAATCACAAAAAAAAAAAATATATATATATATATTTATATTTATATTCATATATTTTGAATGGAAATGCGATCCTAATGTGTTTGCTGGAAAGGTCGTTTCTTTGGACACGGGCTGATGCGTCATCTTGGTGTCACTTTCTCTTTTGGAAATCCCGTATGAGGGCATCCAGCTGTTAAAGCCATTGAAACAAGTTAGTCAAGTCTTAGAGAAATACTGAAAATATTCTGTCATGACTAGCTTATGCAACTAGCCTATTTTTTATTGATTAACAAATCAAGCCAAAACAACAGCTGTACCCACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53108 True 487 lncRNA 0.33 1 10087538 10088024

Neighbor

gene id symbol gene type direction distance location
CI01000006_09998680_10008491 LHX5 coding upstream 78490 9998680 ~ 10009048 (+)
CI01000006_09918611_09921465 MZT2B coding upstream 165745 9918611 ~ 9921793 (+)
CI01000006_09910027_09913958 NA coding upstream 173434 9909370 ~ 9914104 (+)
CI01000006_09891107_09897750 NA coding upstream 189775 9891107 ~ 9897763 (+)
CI01000006_09884959_09889794 NA coding upstream 197249 9884439 ~ 9890289 (+)
CI01000006_10177090_10192651 NA coding downstream 89066 10177090 ~ 10193519 (+)
CI01000006_10363884_10364804 NA coding downstream 275772 10363796 ~ 10365571 (+)
CI01000006_10518326_10566504 SFSWAP coding downstream 430302 10518326 ~ 10566504 (+)
CI01000006_10574971_10578629 NA coding downstream 486584 10574608 ~ 10578964 (+)
CI01000006_10593624_10605226 NA coding downstream 505220 10593244 ~ 10606273 (+)
G46704 NA non-coding upstream 562 10086377 ~ 10086976 (+)
G46690 NA non-coding upstream 45267 10031811 ~ 10042271 (+)
G46681 NA non-coding upstream 69455 10017424 ~ 10018083 (+)
G46680 NA non-coding upstream 70137 10016350 ~ 10017401 (+)
G46677 NA non-coding upstream 74422 10012890 ~ 10013116 (+)
G46706 NA non-coding downstream 605 10088629 ~ 10088834 (+)
G46717 NA non-coding downstream 33297 10121321 ~ 10125011 (+)
G46652 NA non-coding downstream 68555 10156579 ~ 10159251 (+)
G46741 NA non-coding downstream 122879 10210903 ~ 10211117 (+)
G46750 NA non-coding downstream 139889 10227913 ~ 10228126 (+)
G45416 NA other upstream 1252841 8818814 ~ 8834697 (+)
G45355 NA other upstream 1875150 8209555 ~ 8212388 (+)
CI01000006_08198328_08199463 NA other upstream 1887393 8197881 ~ 8200145 (+)
G45336 NA other upstream 2065587 8019342 ~ 8021951 (+)
G45265 NA other upstream 2167183 7883867 ~ 7920355 (+)
G47145 NA other downstream 397334 10485358 ~ 10511806 (+)
G47159 NA other downstream 1328205 11416229 ~ 11521703 (+)
G47318 NA other downstream 1536243 11624267 ~ 11638252 (+)
G48094 NA other downstream 2189596 12277620 ~ 12279541 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_018785 gnrh2 coding NC_007132.7 CM002905.2 15824182 ~ 15828029 (+)