RNA id: TU53108


Basic Information

Item Value
RNA id TU53108
length 487
lncRNA type intronic
GC content 0.33
exon number 1
gene id G46705
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 10087538 ~ 10088024 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACACACAAACTGTTGTTTAGAAACAATTTCTGACTAAAACTGGCTAAAAAAGACACTGAACAATTAAAACAAAATACCAAAATAAAGCCTTTATTGAAGGAACTGCTGCAAATGGTTACATAATGCCGGCAGTAGGTTTACTCACGAACAGAACAAAATGTAGAACATACAAAAAGAAAAAAGAAATCACAAAAAAAAAAAATATATATATATATATTTATATTTATATTCATATATTTTGAATGGAAATGCGATCCTAATGTGTTTGCTGGAAAGGTCGTTTCTTTGGACACGGGCTGATGCGTCATCTTGGTGTCACTTTCTCTTTTGGAAATCCCGTATGAGGGCATCCAGCTGTTAAAGCCATTGAAACAAGTTAGTCAAGTCTTAGAGAAATACTGAAAATATTCTGTCATGACTAGCTTATGCAACTAGCCTATTTTTTATTGATTAACAAATCAAGCCAAAACAACAGCTGTACCCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53106 lncRNA upstream 562 10086377 ~ 10086976 (+) False G46704
TU53105 lncRNA upstream 562 10086740 ~ 10086976 (+) True G46704
TU53090 lncRNA upstream 45267 10031811 ~ 10042271 (+) True G46690
TU53081 lncRNA upstream 69455 10017424 ~ 10018083 (+) False G46681
TU53079 lncRNA upstream 69455 10017583 ~ 10018083 (+) True G46681
TU53109 lncRNA downstream 605 10088629 ~ 10088834 (+) True G46706
TU53122 lncRNA downstream 33297 10121321 ~ 10125011 (+) True G46717
TU53039 lncRNA downstream 68555 10156579 ~ 10157302 (+) False G46652
TU53041 lncRNA downstream 68555 10156579 ~ 10157302 (+) False G46652
TU53043 lncRNA downstream 68555 10156579 ~ 10157302 (+) True G46652
CI01000006_09998680_10008491.mRNA mRNA upstream 78490 9998680 ~ 10009048 (+) True CI01000006_09998680_10008491
CI01000006_09918611_09921465.mRNA mRNA upstream 165745 9918611 ~ 9921793 (+) True CI01000006_09918611_09921465
CI01000006_09910027_09913958.mRNA mRNA upstream 173434 9909370 ~ 9914104 (+) True CI01000006_09910027_09913958
CI01000006_09891107_09897750.mRNA mRNA upstream 189775 9891107 ~ 9897763 (+) True CI01000006_09891107_09897750
CI01000006_09884959_09889794.mRNA mRNA upstream 197249 9884439 ~ 9890289 (+) True CI01000006_09884959_09889794
CI01000006_10177090_10192651.mRNA mRNA downstream 89066 10177090 ~ 10193519 (+) True CI01000006_10177090_10192651
CI01000006_10363884_10364804.mRNA mRNA downstream 275772 10363796 ~ 10365571 (+) True CI01000006_10363884_10364804
CI01000006_10518326_10566504.mRNA mRNA downstream 430302 10518326 ~ 10566504 (+) True CI01000006_10518326_10566504
CI01000006_10574971_10578629.mRNA mRNA downstream 486584 10574608 ~ 10578964 (+) True CI01000006_10574971_10578629
CI01000006_10593624_10605226.mRNA mRNA downstream 505220 10593244 ~ 10606273 (+) True CI01000006_10593624_10605226
TU51632 other upstream 1252841 8818814 ~ 8834697 (+) True G45416
TU51562 other upstream 1875150 8209555 ~ 8212388 (+) True G45355
TU51557 other upstream 1887393 8198844 ~ 8198909 (+) True G45351
TU51555 other upstream 1887836 8197881 ~ 8199702 (+) False CI01000006_08198328_08199463
TU53040 other downstream 68555 10156579 ~ 10159251 (+) False G46652
TU53607 other downstream 397334 10485358 ~ 10511806 (+) True G47145
TU53635 other downstream 1328205 11416229 ~ 11416560 (+) False G47159
TU53639 other downstream 1328205 11416229 ~ 11521703 (+) True G47159
TU53826 other downstream 1536243 11624267 ~ 11638252 (+) True G47318

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00037363 True 659 mRNA 0.45 4 NC_007132.7 15824182 ~ 15828029 (+)