G46704


Basic Information

Item Value
gene id G46704
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 10086377 ~ 10086976 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU53106
TGTGTACATTCCCTTGTAAGAATGGCAGCCGTTCAAAATATGCAGTGTTGTAGAAAACCAGATGGAAAGGTTAAATCTAGTAGGAAGAACTTGTAATCTAGCTTTTACTTTGAAAATGACAATGTCCTCACTAAGTACTGTATTCTTAAGAAATGAATGAGAAACACACATTTGTGTCTTTAATCTCCAGACCTGACCACTTCAGAAAATAATTTGTTCTGGCCAGCATGTTTTTAACTATACTGTCTTCTCTAGAAGCGATCTGGACATTATCTGCATAGCCCTGCACTGGAATAGGAGATATCACACACACACACACACTGCAGTGAATGTTCTAGTTTCCAGTGGTGAACAAAATACTTACCATTTTCGAAGTCAGTGAAATGAAAGTTGGTTGCTTGTCAAACTTCCGGCTTATTTCTTTTTTCGGTCACGTAGGTTCACATGAATTCAGGATAATTGGGACACTTTTTCCCTGTCATGAATACAATACCTTTGTCCAAATTACGTTCAATGCTTCTTTTTTTCTATTAGAAGAGAACATACATTGTTATTCCATGTGAATGTGGGGCTTGTATATCACAGACATGATGGTGGTAT
>TU53105
CCATTTTCGAAGTCAGTGAAATGAAAGTTGGTTGCTTGTCAAACTTCCGGCTTATTTCTTTTTTCGGTCACGTAGGTTCACATGAATTCAGGATAATTGGGACACTTTTTCCCTGTCATGAATACAATACCTTTGTCCAAATTACGTTCAATGCTTCTTTTTTTCTATTAGAAGAGAACATACATTGTTATTCCATGTGAATGTGGGGCTTGTATATCACAGACATGATGGTGGTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53106 False 600 lncRNA 0.37 1 10086377 10086976
TU53105 True 237 lncRNA 0.37 1 10086740 10086976

Neighbor

gene id symbol gene type direction distance location
CI01000006_09998680_10008491 LHX5 coding upstream 77329 9998680 ~ 10009048 (+)
CI01000006_09918611_09921465 MZT2B coding upstream 164584 9918611 ~ 9921793 (+)
CI01000006_09910027_09913958 NA coding upstream 172273 9909370 ~ 9914104 (+)
CI01000006_09891107_09897750 NA coding upstream 188614 9891107 ~ 9897763 (+)
CI01000006_09884959_09889794 NA coding upstream 196088 9884439 ~ 9890289 (+)
CI01000006_10177090_10192651 NA coding downstream 90114 10177090 ~ 10193519 (+)
CI01000006_10363884_10364804 NA coding downstream 276820 10363796 ~ 10365571 (+)
CI01000006_10518326_10566504 SFSWAP coding downstream 431350 10518326 ~ 10566504 (+)
CI01000006_10574971_10578629 NA coding downstream 487632 10574608 ~ 10578964 (+)
CI01000006_10593624_10605226 NA coding downstream 506268 10593244 ~ 10606273 (+)
G46690 NA non-coding upstream 44106 10031811 ~ 10042271 (+)
G46681 NA non-coding upstream 68294 10017424 ~ 10018083 (+)
G46680 NA non-coding upstream 68976 10016350 ~ 10017401 (+)
G46677 NA non-coding upstream 73261 10012890 ~ 10013116 (+)
G46671 NA non-coding upstream 92355 9993743 ~ 9994022 (+)
G46705 NA non-coding downstream 562 10087538 ~ 10088024 (+)
G46706 NA non-coding downstream 1653 10088629 ~ 10088834 (+)
G46717 NA non-coding downstream 34345 10121321 ~ 10125011 (+)
G46652 NA non-coding downstream 69603 10156579 ~ 10159251 (+)
G46741 NA non-coding downstream 123927 10210903 ~ 10211117 (+)
G45416 NA other upstream 1251680 8818814 ~ 8834697 (+)
G45355 NA other upstream 1873989 8209555 ~ 8212388 (+)
CI01000006_08198328_08199463 NA other upstream 1886232 8197881 ~ 8200145 (+)
G45336 NA other upstream 2064426 8019342 ~ 8021951 (+)
G45265 NA other upstream 2166022 7883867 ~ 7920355 (+)
G47145 NA other downstream 398382 10485358 ~ 10511806 (+)
G47159 NA other downstream 1329253 11416229 ~ 11521703 (+)
G47318 NA other downstream 1537291 11624267 ~ 11638252 (+)
G48094 NA other downstream 2190644 12277620 ~ 12279541 (+)

Expression


Co-expression Network