RNA id: TU53122


Basic Information

Item Value
RNA id TU53122
length 437
lncRNA type inter_gene
GC content 0.01
exon number 2
gene id G46717
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 10121321 ~ 10125011 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTAAGATGAAGGTGCTGTACATTCTGCATACGAAACAATGTTATCTGAATCAACTTACACTACCGTTGTAAAGTTTGGAGTAGTTTATTAATACGCTGCTCTGCACCCTGGAGGAGTGTGCAGTGTGACAGGAATAATCTCAATGCCCCTCTTCATCTCCCTCAAACTGGGACAGCCTAGCGGACAGGCAAGATGACACTGCATCCGCCGCTGTCACGAGAAGAAAACTCTGATGGTGTTTCATAACACACACATCCCACCATTCCTGCAACTTCCTGTGCACCGCTTCCAGCAACTCAAGATCAAATGATTTACTCAAGTTACCTGATTACAAAACAGCAAAGGGAGAATTTTCATTCTCTAGTAAACGCACACCAAAAAATGCTGATCTCAAGAAAGACAAAACAGACTCTCAGCTCAGATGAACACAATTTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53109 lncRNA upstream 32487 10088629 ~ 10088834 (+) True G46706
TU53108 lncRNA upstream 33297 10087538 ~ 10088024 (+) True G46705
TU53106 lncRNA upstream 34345 10086377 ~ 10086976 (+) False G46704
TU53105 lncRNA upstream 34345 10086740 ~ 10086976 (+) True G46704
TU53090 lncRNA upstream 79050 10031811 ~ 10042271 (+) True G46690
TU53039 lncRNA downstream 31568 10156579 ~ 10157302 (+) False G46652
TU53041 lncRNA downstream 31568 10156579 ~ 10157302 (+) False G46652
TU53043 lncRNA downstream 31568 10156579 ~ 10157302 (+) True G46652
TU53149 lncRNA downstream 85892 10210903 ~ 10211117 (+) True G46741
TU53158 lncRNA downstream 102902 10227913 ~ 10228126 (+) True G46750
CI01000006_09998680_10008491.mRNA mRNA upstream 112273 9998680 ~ 10009048 (+) True CI01000006_09998680_10008491
CI01000006_09918611_09921465.mRNA mRNA upstream 199528 9918611 ~ 9921793 (+) True CI01000006_09918611_09921465
CI01000006_09910027_09913958.mRNA mRNA upstream 207217 9909370 ~ 9914104 (+) True CI01000006_09910027_09913958
CI01000006_09891107_09897750.mRNA mRNA upstream 223558 9891107 ~ 9897763 (+) True CI01000006_09891107_09897750
CI01000006_09884959_09889794.mRNA mRNA upstream 231032 9884439 ~ 9890289 (+) True CI01000006_09884959_09889794
CI01000006_10177090_10192651.mRNA mRNA downstream 52079 10177090 ~ 10193519 (+) True CI01000006_10177090_10192651
CI01000006_10363884_10364804.mRNA mRNA downstream 238785 10363796 ~ 10365571 (+) True CI01000006_10363884_10364804
CI01000006_10518326_10566504.mRNA mRNA downstream 393315 10518326 ~ 10566504 (+) True CI01000006_10518326_10566504
CI01000006_10574971_10578629.mRNA mRNA downstream 449597 10574608 ~ 10578964 (+) True CI01000006_10574971_10578629
CI01000006_10593624_10605226.mRNA mRNA downstream 468233 10593244 ~ 10606273 (+) True CI01000006_10593624_10605226
TU51632 other upstream 1286624 8818814 ~ 8834697 (+) True G45416
TU51562 other upstream 1908933 8209555 ~ 8212388 (+) True G45355
TU51557 other upstream 1921176 8198844 ~ 8198909 (+) True G45351
TU51555 other upstream 1921619 8197881 ~ 8199702 (+) False CI01000006_08198328_08199463
TU53040 other downstream 31568 10156579 ~ 10159251 (+) False G46652
TU53607 other downstream 360347 10485358 ~ 10511806 (+) True G47145
TU53635 other downstream 1291218 11416229 ~ 11416560 (+) False G47159
TU53639 other downstream 1291218 11416229 ~ 11521703 (+) True G47159
TU53826 other downstream 1499256 11624267 ~ 11638252 (+) True G47318

Expression Profile