onecut3a (onecut3,onecut3a,LOC107596910,LOC107676954,LOC107586457,LOC107719659,LOC107655183,LOC105938949)


Basic Information

Item Value
gene id onecut3a
gene name onecut3,onecut3a,LOC107596910,LOC107676954,LOC107586457,LOC107719659,LOC107655183,LOC105938949
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 10874428 ~ 10892023 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU224444
aaaaaacaactcCTCCCATTCGAAGTGGTGGGGacactttttttctgcatgacTATTGTATACTGTATAGAGTAAAGCTGGATTGACCTGGACTTTGGTGGGAGTGACTAGGACGACTAGACCCCGGGGGAAGTTGGACATGGGTGGGAAGGGTGGTACAAGTGTTGGAGGGGTCTTTGTTTTGTAGAGTTTTCTGTCACTGTTGTTTTTCACTGGTTGTGTGCATGTATCGTTGCAGCCCTTTCTGCCCTCCTTGTATTTCTTTTGTGTATATAACTCTTTATAACGGGCCATGACCGTGTATCCTGGGCGACTGAACTTGGTCACGGACCCCTATGTACACACGTCTCCTCTTCTGAAATGTAATcttgtgtgcatttgtttacatgtgGCGTGTTTCTCGATTTGGGTTGCACACCATTTCACACAAAACTGGAATGCTACTGGACAGTTTTTTTGCAACAGACCCCTCCAACCAGAAATGGTCTCTCATTGACTGTAAAACAGCATCACGTACATCATGTTTCTCTCCGGGTCTGTCTGCAGATCCAACCCCCAATCACACTGTGCTCTTCCTCTTCTGTTACCTGTCAATCAATCAGAACCAAGTGTCTTTGTGATGGTAGAAGACAATCAGTTTCaaaacaaggagaaaaaaatggtaaagaGAAGACAGgctgagaggaggaggagaagaggagaaggGAAAGAGGAAAGAGGCTCTTCACGGGTTGCAAGTAGGCGACCGCTGCCCTATTTAGCTTGCTGTGGTGCTTATGGTGTGCAGTGTTCGCTAGATTTGCAAACACTCTTGCCTGATAATCTTAAAAGTAGCATTGCGTAGTAATGCATCGAAAAACGGTCAAgtctttcaagaaaaaaaatggacagaGTAGCAACGGTGACGCTAACGACTAATGTTCACTTTATTATCTAACTACATTTGTCGGTCTTAACTACTCTCACACTGCTGTCTTGAAGTGAAAAGATTTAAGTCCAGCAGGGTGTTGAAAAGAGCTAGCGCAGACAAGTGCTAACATTTGCGCTAACAATGCTCTCTAATAACCACAAACCAGTCGATAAAGTGCTGCCGAGGCTGGTTGTCTTTGCAGAGAGAactatgcaaaaatacaaagaaaagaaaagcctTTACTTCAATCATGATCAATGTGGTGGGTTCAGGCTTTTTTCCAGTTTCTCAAAATCCATTTCAGTCTCTATGATGACGTTCAAGAATACACGTACCGATTGAAGATTAAAACACCTGAAATGATCAGATAAGTAAACTGTATTAAACTAGCCTTCACTTAGGTGGAATTAGCAAATTTGGTTTGTTgggttattttttaataagtgcTTTGAGCACTTGGCAGGTTGAGAGACCAACTAAATAATAAGCTAATCTAACTAATACCAGCAAACCATCTTGAGCtagtttaagtgtttttaagcaGGGTATTGCAATGTATGCAAATGATCCCAGATTATTTAATACTAAAACACTAAGTAGGAAGGAGTGTTCGCAAAGTAAAGAGCTCTTGCACATAAACCCTTCTTAGAGCACATCTACCCAAGCCAAAGATTGATCCAAGGGTAAAGacaatccaaaaaaaacaaagcaaaacaaaaaaaacaatcagtgtgtgtttctgaagaTGTTGAGATGCCTGGCTGACTACGTTTGACGGATGTAAGGATTTCCCTTTCATGAATTTAAGTTCAACGTTAAGATCCAGTGCAGGAAATATTAAGGAGAAAACAcctattattgtttaaaatcttCTGCACAAGATTTTTCTGGTTTTGATATCTCATTGAAgcttcacattcacacacaaacttGTTCTCAGGCAGCTGATAAAGGTTAAAGGGCATGTTATGGAGAGCCTCGTTCCTCCTCCTATCCTACAGGGGGAGCCAGAGAGCCTGTACAGCACTTTTCATTCAGTGCAAGAAGGAGACAAATTGGAGTAATAACTGTTACAGgagaaaaaaaggtaatatgGGTAAATTGcgtgttttgaaataaaataaaaccattgttGA
>XM_043223288.1
CCCTATTAGGTGTCTTTCGTCTGTACGACAGACAGTGTTGGTGACGTCAGTACTAGTCTGAAGTAGAGAGTGCATCCTTTAAAAAGGCTTTTACACCTTGATGAAGTTTCACATGGATGTTTTTGTTCTTGGGTTCTTTAGAAGGCATCTGCTGGCGCTTTAAGCGCGCCGGAAAGGCGATAGGCTAATAAAGACTTTTCTGAGCGACAAAACCAGCCCACGTGACCAATTTTGTTCTCGACAGAAAACACGGCTCTTTGCCGAACCCGAGAACCGTCGAAAAACCTCTATTTTGTGCCGCGCGCGCGCACCAGCGCACACAGGCACAGCACATCTTAATATATTGCGCGGTCACGTGGCAGACACTCTCACTCGGTCAGCCTCGACTGTCAGTAGTAAGACCCGCGCCACGGCGATAGATACAACCGTTTAGACGCCAGGCGTACGTACATGCGCGCGGTGAAATGCTGGATTGACTAACACCGAAGATCTCGGGGATCAATGGCGCGCGGCTTTGAGATCGTTTAAAATTTATTGGAAgggagagtgtgagagagaaagggaagagagagagggagagagagagagaagaaaacgGTGTCTTTCAACAATGGAACTTACAATGGAAAACATTGGGAATCTGCACGGCGTGTCACACTCCCATCAAACCGGGGACTTGATGAACTCTCCACATGCGCGACAGTCGGCGACACATAGGAACTTGGTGTCATCGCACGGGAGGTCAGCGATGGTGTCCAGCATGGCCTCGATACTGGACGGGGCCGGGGAGTATCGCACGGACCATTCGCTGTCCGGTCCTCTGCATCCAGCGATGACCATGTCGTGCGATTCGAGCATGAGCCTGAGCAGCACTTACACCACGCTGACGCCGCTGCAGCACCATCTGCCTCCCATATCCAACGTCTCAGAGAAATTTCACCACCACCCGCACCCTCACGCTCACCACCATCCCGCGCACCAGCGTCTCGCCGCCGGGAACGTCAGCGGCAGCTTCACGCTGATGCGGGACGACCGGGGCCTCGCGTCTATGAGCAACCTATACGGCCACTATTCCAAAGACTTGTCCGGGATGGGACCGCCTTTATCGCCTCTTTCTAACGGCCTCGGGTCTTTGCACAACTCTCAGCAGGCTCTGAGCGCATACGGTCCGACCGCTCACCTGGGGAACGACAAGATGATTTCCACGGGAGGCTTCGAGACTCACGCTGCGATGCTCGGCCGCGGCGAGGAGCACCTGGCGCGGGGTTTAGGGGGCCACGGGGCGGGCATCATGTCTTCTCTCAACGGTATCAATCACCACCACGGTCACTCACATTCTCAGGCGAACGGCTCGGTGCTGTCGGAGCGGGACAGGCAGGCGGCGGGAGGCGGCGGACAGGGCGGTGGGTCGGGGCAGGTGGAGGAGATCAACACCAAAGAGGTGGCTCAGCGGATAACGGCGGAACTAAAGAGGTACAGCATCCCGCAGGCCATCTTTGCCCAGAGGATCTTGTGTCGCTCTCAAGGAACCCTCTCGGACCTCCTGCGGAATCCCAAACCCTGGAGTAAACTCAAGTCAGGTCGGGAGACGTTCAGACGGATGTGGAAGTGGCTCCAGGAGCCCGAGTTCCAGCGCATGTCGGCCCTTAGGCTTGCAGCTTGCAAACGTAAGGAACAGGAGCAGCACAAGGAACGCAATATGGCACCCAAGAAGCAGCGCTTGGTCTTCACCGACCTGCAGCGCCGCACACTCATCGCCATTTTCAAGGAGAACAAGCGGCCCTCAAAGGAAATGCAGCTGACCATCTCACAGCAGCTGGGACTGGAACTCAGCACCGTCAGCAACTTCTTCATGAATGCACGTCGCCGCTGCGTTGACCGCTGGCATGAGGAACACCATCACGGCCACGTAGCCAGTCCCAGCCAGCCAGGCACCTCTGCCACCACCTTCTCCAAGGCTTAAATCTAAATCCCTTTTCCCCTGGGCGGCTGAGACTGGACCGGTCCAACCTCACAGTCACCCGTTGCGTGCCAATCAATCCCACTGCTGCCAAAAATGGCGACGTTTCATGTTAAATGCAACCTTTTACTTTGGGACTGTTATGAAATCAAGCCAAACATCTCCATATGGAAAAAGCACCACATAATATTCACGTAAACCACGACAGAGTGAGCTGAAATGGTCTGTTTGTGCGGTTGAGGGCAAACGAGCACTTTCACAGCTCACAGCACAGAAGGCTTGTTACTCAAGCAAGGTTGTCAAAGAAAGCCACCACCTGCATCATCACTCTCGGGCCCATGGCGGCACAATTCCCTAATGGCCAGTTGTTTCACTGAGGCTCTCAGATCATATGCTAAGCTAATGAATTGAGAGACTAATCGATACAGGCAGAAAAGCGAAGGAGGTCGACCTCTACTGAAGGTGAAATGGAACGAGCTCCCACAACAAGGACTCGAACGTTCACCCAGCATGGCTCTCCATACGGTTTATTTTGCACAGATGGAAATGGAGGGCTAGACTGCGATGTTTCATGGCACTTGTGGTTAACACATGTTCTTATAATCCAAACTGTCCGTAATGCAACAAGCAAACCAGTCAACTTCAAGTCTGGGGGACGAAATACTGGACCATTTTTAGCAAAAGGTGCACCCTTTCTGACTGTGACCTATGATATTTCAACTATGAATAGAATATTTTTCATTCCGTATAGGTACACAATAGGCCAAATGTCAAGACAGGTACAGCCAAACACAACGAGGCACATTTTAACCACGTATGGAAATATTTGTTACAAATTGCTACATCCACACGCAACtgaaatcttactgacaaatcaaatattttgtttatcctGTAAAGTGGACAAGGGGTAAACACAgttcaaaatgttacattaaatcTAGTGCCAATAACGTTTgccttaatataatataaaagttcaCGTACTCTCAGCCAGAGTCCACTCCCAAACTGGCATTATGTGCCATAGCAACCAACAATCatcttttaaaaagaattagaatcttttttaaaacaaaaataatcaatgcTTTAAATCATTCAGTACAGATAGTCTATAATAAATCCATCTGAAAAGGTAGAAATATCTCTACAGCAACAgaacagaaacacagaaaaacactaaaaaaaactgtttctcCTCTTTAACCCCTAAACCcctatttttcttttgatctCTCTCCCAGTTGTGTTCTCTTCGTAATATTAAAGCGGGTAATTggtacaaaatatttctatttcttattAAACTTGTGATCTGTGCAAATGTAAGGCACTTTGTTGATCATTTggaaaattcattaaaaaaaggactTTCTAAAAGAGTAACCAAACATGGGAGGACTGCAGCTGGACATCTCTGCATTGCATGTGAACTACCACAGGTCATAACGCAAGGAACTTTCACTGACCATGAAAGAGAAAACGCTTTCTCTTGGCTCTGTTGAAGAGCAAAcgaaccaaaccaaaaaaaaacatgaattccACCCGAAAATTCTCCCAAAATCCTCAAAAAACCCTGCCAAATGGGTGTGAAACAAGGGCACAACCTTACCTCCGTGGGGGGATGTTCAAAATCGAAGAGGAGTCTTTTTTTAGTGTCTTTGAATGCAACAGTAGCATTTCTGGAAATGTTGCAGGACTTGCTGGACAGATAAAAGTTGGCACTGTTAATGCAATGATGCTCTGAGCATTGATTTATAAGCAGGCCCAGATGGAATCTACAAAATTTTCAGGAGACAAATCAGCAGAATTAATTCAAACAAGGTGCAATGTGTAGCTGAAAGCATAATCAAATTAGcccaaatatttaataaatggacATTCGAGGGGCAGCAGATGTGCAGAACTTTGTAAATGACCAACTCTGTGGAAATCTGCCACAGAATTTTATACTTAAGATTCCGCGTGGGCCTGATTATGAGCATTAAGAGAGAGCAGATTTGTGCTACACAAATCAGCAGGCATCTGTATGTACATTAGCTGATAAAACGGACCTTTTGTTTGTAGTGAGAACCAGTGTGGCTACCTCACTGAGCTGGGTGGTTTGTGAAACAGCCACTGATACCAAAGATTCTTTGACCTGCCAGTCCTGTGCTGCCAAAGGGAGGAATACACACCAAACACCAAAAGCCCAATAGCATCACCAAAGCTGTTACAGATGTAAACAAACGTATTACGTAAATTAATTTTCACGTAAAGGTGATATATACATACTGATACAGTGCAGTCAGACTGCATAGCGCCACACCGAGGGATGCGGCTGCTGTGCAGATTGAGTTGAGTGCCTTTTTCCTTCAACAACGGGTGGGACTGCTCTGaaatacacacgcacgcacacacacacaagaagcacacacacacacacacacacacacacacacctcgacAGTTTACACACGGGCGAAACGCGTTTCAGGTCCGTCTCGCTGGTTTTTCATCGTGTTTCTATGTAAAGACGCGCCGCGCTGGCGTTTCGACCGTTGAGCCGCTTCCCGCGCTATTTTGAATGTGTCGCGCGGGACTgccattttcagttattttccaTTTCTAACGCGGCGTCTCGCGTATTTTGGACGTCTGCTGTGTGAACGAGACCTTACATACTCACGCCTACATGCAATTGTACGGTACGCAGGCATACAGGCATTGAACCAGGGTACGATTTTAACGTTAGTTTGATATAAACTGGTGTTTAAGCACTTTATAATGccaactttattatttttccagtATCACTTGATTAATTATTTGGGCTAACGGCCAGGTTTATATCGCATTAAGCTTGTCTTGAGAGTGAGGCCGGTTTATTTTATGTGCactacaaaatatctttctcTGTTAGCATCGTGTACTTGTACCCTGATTTCACTGAGTATGCCGCAGTACCGTACACACATATGGCCTATTTTCAGGAGCACTTTCTAATTTAAATCAAGATATATCATAAATCAATTTCTAAAATACCAGACGTGACTTTAATCTGAACAAATTCTCAGCTACAATTTTAGTCCGGAACAGGTTCAGAATAAGCTCAGGTTTAGAATTTTTGGGTAATTTGATTATCAAAGATTTAAATAGTGATTCAGGAGAAGTGGCCAttttgaaaaacacattaaaccaGTTCCCTCATTTATTTCTCCCGTTGGAAACCACACAGACTTGGCAGGAAGGTGTTGACAATTGATTCTGAAATACCTCAAATGTTTTGTGTAAAGTTTATGTAATTTAGATTAAACTAATGCTAATTACAATGAGTACACTAACACTACTAAGACTAATAATAGTTAGTTTTTGAACTTGTGACTTGAAGCTTTATACTGTTAAATTGTGTTTATGTTGGTGTTGTTGTTTGGTTTTACTCATTTGCCAatttcttgtttattattattgttgttattattttgatcaATGGCGGTAtgtaatttctttataaaagaaaGACATTTGAATGTTTAGACACACCATGAAGGAAAAGGATTTGAGAGtgaaagcaagcaaaaaaaaaaaaaaaaaaaaaatgaaacaacatttttttttgaaagatgacaaaaaaagagcGAAATCACAAATACGCTGAAATTCCAATATATGCATcaattttctaatattttgttTCAGCATTATTCAAACCTTATCcaaatcgttttttttctttatttaaagcttGATTGTGTTAAGTGCTCCtagcattaatttaaaaaaaatgaaaaaacaactcCTCCCATTCGAAGTGGTGGGGacactttttttctgcatgacTATTGTATACTGTATAGAGTAAAGCTGGATTGACCTGGACTTTGGTGGGAGTGACTAGGACGACTAGACCCCGGGGGAAGTTGGACATGGGTGGGAAGGGTGGTACAAGTGTTGGAGGGGTCTTTGTTTTGTAGAGTTTTCTGTCACTGTTGTTTTTCACTG

Function

symbol description
onecut3a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within liver development. Predicted to be active in nucleus. Is expressed in intestine and liver. Orthologous to human ONECUT3 (one cut homeobox 3).
onecut3 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be part of chromatin. Predicted to be active in nucleus.

NR:

description
hepatocyte nuclear factor 6-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001889 liver development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU224444 False 2046 lncRNA 0.41 1 10889978 10892023
XM_043223288.1 True 5944 mRNA 0.45 2 10874428 10890192

Neighbor

gene id symbol gene type direction distance location
foxq2 foxq2,LOC107729705,LOC107586390,LOC107655205,LOC107596879,LOC107719640,LOC107676973 coding upstream 17309 10855815 ~ 10857119 (+)
unc13a si:dkey-110c1.7,LOC107729682,LOC107655208,LOC107675908,LOC107719588 coding upstream 114557 10721100 ~ 10759871 (+)
hmg20b hmg20b,LOC107729671,LOC107586380,LOC107719660,LOC107655186,LOC107675902 coding upstream 154111 10716240 ~ 10720317 (+)
rgmd LOC107726535,LOC107655217,LOC107719593,LOC107596905,LOC107675903 coding upstream 411231 10457205 ~ 10463197 (+)
hsd11b1la hsd11b1la,LOC107719662,LOC107586454,LOC107655187,LOC100006793,LOC107675913 coding upstream 448121 10422888 ~ 10426307 (+)
nfil3-4 LOC107676982,LOC107596882,LOC107655201,LOC107719579,LOC107729690,LOC107586432 coding downstream 31725 10923748 ~ 10930951 (+)
crlf1b crlf1b,LOC107729674,LOC107676985,LOC107719637 coding downstream 284485 11176508 ~ 11185087 (+)
cpamd8 LOC107593313,LOC107729694,LOC107676967,LOC107586397,LOC107699407 coding downstream 297829 11189852 ~ 11225519 (+)
odf3l2b odf3l2,LOC107593346,LOC107676969,LOC107729669,LOC107699397,LOC107586461 coding downstream 334137 11226160 ~ 11229779 (+)
shc2 shc2,LOC107729700,LOC107593314,LOC107586398,LOC107719564 coding downstream 340712 11232735 ~ 11249556 (+)
G151624 mbd3,LOC108427158 non-coding upstream 34114 10777727 ~ 10840314 (+)
G151642 NA non-coding upstream 43084 10830858 ~ 10831344 (+)
G151603 NA non-coding upstream 162456 10710513 ~ 10711972 (+)
LOC122327757 creb3l3a,LOC107729712,LOC107675914,LOC107596868,LOC107655213,LOC107719590,LOC107586456 non-coding upstream 164673 10701622 ~ 10709755 (+)
LOC122328232 NA non-coding upstream 165318 10709044 ~ 10709110 (+)
G151703 NA non-coding downstream 40640 10932663 ~ 10932995 (+)
G151738 NA non-coding downstream 183873 11075896 ~ 11077069 (+)
G151707 NA non-coding downstream 236503 11128526 ~ 11164328 (+)
LOC122327758 NA non-coding downstream 236883 11128906 ~ 11140378 (+)
G151750 NA non-coding downstream 290818 11182841 ~ 11183080 (+)
G151620 NA other upstream 37063 10806052 ~ 10837365 (+)
gatad2ab gatad2ab,gatad2a,LOC107599456,LOC107728574,LOC107554816 other upstream 880987 9970622 ~ 9993441 (+)
LOC122328159 NA other upstream 910794 9923547 ~ 9963634 (+)
mef2b LOC107687723,LOC107554810,LOC107728551,LOC107719669,LOC107655235,LOC107599488 other upstream 963635 9895441 ~ 9910793 (+)
borcs8 borcs8,LOC107728595,LOC107554813,LOC107599453 other upstream 980921 9888163 ~ 9893507 (+)
si:dkey-172o19.2 LOC107729689,LOC107676945,LOC107596881,LOC107719578 other downstream 26066 10918089 ~ 10922031 (+)
peak3 LOC107676959,LOC107729697,LOC107593354,LOC107655164,LOC107586433,LOC107719638,LOC107593339 other downstream 43012 10935035 ~ 10994944 (+)
mier2 LOC107729715,LOC107593358,LOC107676949,LOC107699399,LOC107719562,LOC107586401 other downstream 426084 11318107 ~ 11328230 (+)
LOC122327289 capn8,LOC107565180,LOC107755343,LOC107722658,LOC107655376,LOC107655329,LOC107566058,LOC107571859 other downstream 930911 11822934 ~ 11825207 (+)
LOC122327134 senp7,si:dkey-100n23.3,LOC107748206,LOC107600307,LOC107655520,LOC107571594,LOC107717676,LOC107704544,LOC107566043,LOC107704674 other downstream 934542 11826565 ~ 11835134 (+)

Expression


Co-expression Network