LOC122327134 (senp7,si:dkey-100n23.3,LOC107748206,LOC107600307,LOC107655520,LOC107571594,LOC107717676,LOC107704544,LOC107566043,LOC107704674)


Basic Information

Item Value
gene id LOC122327134
gene name senp7,si:dkey-100n23.3,LOC107748206,LOC107600307,LOC107655520,LOC107571594,LOC107717676,LOC107704544,LOC107566043,LOC107704674
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 11826565 ~ 11835134 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU224829
TCTTGTAGAAAAGGCCCCGCAAGCATCTGTAGACAGATCTCatgttttcagcagttttttcTATAAACAACTCACACGCAGAGACAATGCTAATGAGGACAGTACAAGCACACCAGCTCAGGTCAGAAGGCATCAGCGTGTGAGGACATGGACACGTCATGTAGACATCTTTGACAAAGACTTCCTGTTTGTGCCAGTCAATCAAGAAGCTCATTGGTACCTCGTGGTGATCTGTTTCCCCGGGTTAGAAGTGCCACGGTTTGTGAGGAGGGACGGACTCGAGGGAGACTCTGTGCAGGGTGATGGAAGTGAAGGTTTGGGTGAGTCTGAGGCAGCGGTCCAGGAAGAGAATAGATCCAACAGTGACGAGAACAAAGATGACAGTCATATAAAGTCGAACGTGTCTCATCTTCCTAACTGTACAGAAAATACCTGCAAGAGACCTATCGTATGTAaaagACCATGTATTCTCATCATGGATTCCCTGAAGTTGTCGGTTCACGAACGTATCTTCAAACTCTTGCGAGAGTGAGTatcacattacattacattacattaagttGCACTGTTGTTTTGctctctttaata
>TU224830
TCTTGTAGAAAAGGCCCCGCAAGCATCTGTAGACAGATCTCatgttttcagcagttttttcTATAAACAACTCACACGCAGAGACAATGCTAATGAGGACAGTACAAGCACACCAGCTCAGGTCAGAAGGCATCAGCGTGTGAGGACATGGACACGTCATGTAGACATCTTTGACAAAGACTTCCTGTTTGTGCCAGTCAATCAAGAAGCTCATTGGTACCTCGTGGTGATCTGTTTCCCCGGGTTAGAAGTGCCACGGTTTGTGAGGAGGGACGGACTCGAGGGAGACTCTGTGCAGGGTGATGGAAGTGAAGGTTTGGGTGAGTCTGAGGCAGCGGTCCAGGAAGAGAATAGATCCAACAGTGACGAGAACAAAGGTAAGATGCGTCAGTTTTGAACATTTGTAATTCTATGCTCacgacttttaaaaaaatcatttgatgaTTCTGGACTATTCTTAATTTAGATGACAGTCATATAAAGTCGAACGTGTCTCATCTTCCTGTAagtaaaattatgtttaataacagGTCTCGCTAGTAGGAAATCTTTAATTTGAAAGCTTGATTTGTTGGATTGCATTCGATTTGATATAATGTGATGTGCACAGATATTTTGCACTTGCACAGTTATAGCAGAACCTTTTTCCTCTGTAGAACTGTACAGAAAATACCTGCAAGAGACCTATCGTATGTAaaagACCATGTATTCTCATCATGGATTCCCTGAAGTTGTCGGTTCACGAACGTATCTTCAAACTCTTGCGAGAGTGAGTatcacattacattacattacattaagttGCACTGTTGTTTTGctctctttaata
>TU224831
TGGTGTTGACCGGTCAGTTGGAGGATCTTCAGGCAGCTCTGTTGGCGTCTCTCATGGACGTAATTGGCCTGCGTCATGGTCAGAGCTGTTTGAGTAACTCTCTGTCCTGGTCAGATGGACTAAATCAGCTTCATTGCCACCTACGGGGCGAACATCTTATGTCCCTGCTGGGACAAAATGTGAAGGATGCTGGACAGGACACGGCAAAGGAGAACTCAAGTGGGACCAGCAGCTGGCTAAGAGAGCCAACAGTCAGAAGACCCCTGCGGAGCCACagccggcaacagagctcaCCTCGCAGGCTGATCCAGTACCCGCCTCCCCCCTCCAAGGGCGGCATTACCGTGACAACCGAGGACCTGGAGTGCCTCAAGGATGGCGAGTTTCTCAACGACGTCATCATCGACTTCTACCTCAAGTACCTTCTGTTGGAAAGAGCTGACAAAGATGTGGCCGAAAGATCTCACATCTTCAGCAGCTTCTTCTACAAGCAACTGACTCGGAAGAACGCTAGCTGTCCTGAAGACTCTGGAAGCACAGCTTCACACAGACGACATCAGAGAGTAAGAACATGGACCCGTCACGTGGACATATTTAGCAAAGACTACCTTTTTATTCCCGTAAATCATGAGGCTCACTGGTACCTCGTGGTGATCTGTTTTCCCGGTCTGGAACAGTCTGAGTGGTTACCGTGGAGAAACAAAGGCCCTGTGTCCCAGGATAAGAGTCAG
>XM_043222318.1
atttttctattgtgttttcaGGACAGGCCTGTCCTTTCGTCCTGCTGGTGTTGACCGGTCAGTTGGAGGATCTTCAGGCAGCTCTGTTGGCGTCTCTCATGGACGTAATTGGCCTGCGTCATGGTCAGAGCTGTTTGAGTAACTCTCTGTCCTGGTCAGATGGACTAAATCAGCTTCATTGCCACCTACGGGGCGAACATCTTATGTCCCTGCTGGGACAAAATGTGAAGGATGCTGGACAGGACACGGCAAAGGAGAACTCAAGTGGGACCAGCAGCTGGCTAAGAGAGCCAACAGTCAGAAGACCCCTGCGGAGCCACagccggcaacagagctcaCCTCGCAGGCTGATCCAGTACCCGCCTCCCCCCTCCAAGGGCGGCATTACCGTGACAACCGAGGACCTGGAGTGCCTCAAGGATGGCGAGTTTCTCAACGACGTCATCATCGACTTCTACCTCAAGTACCTTCTGTTGGAAAGAGCTGACAAAGATGTGGCCGAAAGATCTCACATCTTCAGCAGCTTCTTCTACAAGCAACTGACTCGGAAGAACGCTAGCTGTCCTGAAGACTCTGGAAGCACGCCCTCTCAGGTCAGAAGGCATCAGCGTGTGAGGACATGGACACGTCATGTAGACATCTTTGACAAAGACTTCCTGTTTGTGCCAGTCAATCAAGAAGCTCATTGGTACCTCGTGGTGATCTGTTTCCCCGGGTTAGAAGTGCCACGGTTTGTGAGGAGGGACGGACTCGAGGGAGACTCTGTGCAGGGTGATGGAAGTGAAGGTTTGGGTGAGTCTGAGGCAGCGGTCCAGGAAGAGAATAGATCCAACAGTGACGAGAACAAAGATGACAGTCATATAAAGTCGAACGTGTCTCATCTTCCTAACTGTACAGAAAATACCTGCAAGAGACCTATCGTATGTAaaagACCATGTATTCTCATCATGGATTCCCTGAAGTTGTCGGTTCACGAACGTATCTTCAAACTCTTGCGAGAGTGAGTatcacattacattacattacattaagttGCACTGTTGTTTTGctctctttaatattattgttataactATTTGTTTACTAgtatt

Function

symbol description
si:dkey-100n23.3 Predicted to enable SUMO-specific endopeptidase activity. Predicted to be involved in protein desumoylation. Predicted to act upstream of or within proteolysis. Predicted to be active in cytoplasm and nucleus. Orthologous to human SENP7 (SUMO specific peptidase 7).
senp7 Predicted to enable SUMO-specific endopeptidase activity. Predicted to be involved in protein desumoylation. Located in nucleus.

NR:

description
PREDICTED: uncharacterized protein LOC107571594

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU224829 False 588 lncRNA 0.45 6 11826565 11835103
TU224830 False 829 lncRNA 0.41 4 11826565 11835103
TU224831 False 731 TUCP 0.53 6 11827344 11833374
XM_043222318.1 True 1091 mRNA 0.49 10 11827299 11835134

Neighbor

gene id symbol gene type direction distance location
LOC122328196 mrpl14,LOC107676385 coding upstream 33400 11792550 ~ 11793165 (+)
LOC122327862 NA coding upstream 34107 11787586 ~ 11792458 (+)
LOC122327737 LOC107717980,LOC107676979,LOC107719556,LOC107699417,LOC107586407 coding upstream 290824 11522004 ~ 11535741 (+)
LOC122327738 LOC107717981,LOC107676948,LOC107593360,LOC107699418,LOC107586443,LOC107719634 coding upstream 313630 11507461 ~ 11512935 (+)
tle2a tle2,LOC107699413,LOC107586403,LOC107593318,LOC107729686,LOC107719561,LOC108430092 coding upstream 444828 11353277 ~ 11381737 (+)
b3galt2 b3galt2,LOC107741544,LOC107715722,LOC107564918,LOC107664691,LOC107560698,LOC107655413 coding downstream 162086 11997220 ~ 12003856 (+)
glrx2 glrx2,LOC107664942,LOC107560687 coding downstream 184108 12019242 ~ 12021636 (+)
uchl5 uchl5,LOC107664699,LOC107655412 coding downstream 186983 12022117 ~ 12026752 (+)
ccdc50a ccdc50,si:ch73-6k16.1,LOC107560694 coding downstream 221686 12056820 ~ 12077871 (+)
LOC122327174 LOC107741537,LOC107564920,LOC107655355,LOC107715710 coding downstream 247287 12082421 ~ 12084561 (+)
LOC122327899 NA non-coding upstream 39854 11777483 ~ 11786711 (+)
G151906 NA non-coding upstream 274254 11551893 ~ 11552311 (+)
G151905 NA non-coding upstream 274776 11551466 ~ 11551789 (+)
G151903 NA non-coding upstream 275695 11550194 ~ 11550870 (+)
G151841 NA non-coding upstream 358291 11465863 ~ 11468274 (+)
G151936 NA non-coding downstream 31948 11867082 ~ 11867541 (+)
G151972 NA non-coding downstream 157456 11992590 ~ 11992800 (+)
G151976 NA non-coding downstream 171134 12006268 ~ 12006582 (+)
G151999 NA non-coding downstream 210718 12045852 ~ 12048265 (+)
G152015 LOC107570371,LOC107664873 non-coding downstream 381313 12216447 ~ 12216846 (+)
LOC122327289 capn8,LOC107565180,LOC107755343,LOC107722658,LOC107655376,LOC107655329,LOC107566058,LOC107571859 other upstream 1358 11822934 ~ 11825207 (+)
mier2 LOC107729715,LOC107593358,LOC107676949,LOC107699399,LOC107719562,LOC107586401 other upstream 498335 11318107 ~ 11328230 (+)
peak3 LOC107676959,LOC107729697,LOC107593354,LOC107655164,LOC107586433,LOC107719638,LOC107593339 other upstream 831621 10935035 ~ 10994944 (+)
si:dkey-172o19.2 LOC107729689,LOC107676945,LOC107596881,LOC107719578 other upstream 904534 10918089 ~ 10922031 (+)
onecut3a onecut3,onecut3a,LOC107596910,LOC107676954,LOC107586457,LOC107719659,LOC107655183,LOC105938949 other upstream 934542 10874428 ~ 10892023 (+)
LOC122327127 vtg6,LOC107563524,LOC107664867,LOC107715697,LOC107664873,LOC107741562,LOC107570371,LOC107734844,LOC107570369,LOC107664832,LOC107564925,LOC107563523,LOC107715728,LOC107655401,LOC107715731,LOC107655402,LOC107576112,LOC107570370,LOC107734958,LOC107579406 other downstream 175335 12010469 ~ 12276608 (+)
LOC122327107 LOC107563522,LOC107715696,LOC108430069,LOC108271041,LOC105898241 other downstream 340553 12175687 ~ 12189006 (+)
G152032 NA other downstream 458266 12293400 ~ 12294717 (+)
G152043 LOC107741571 other downstream 510072 12345206 ~ 12345750 (+)
G152065 LOC107716432,LOC107655331,LOC107575070,LOC107715704,LOC107570368,LOC107755334,LOC107659303 other downstream 574172 12409306 ~ 12423922 (+)

Expression


Co-expression Network