ccdc50a (ccdc50,si:ch73-6k16.1,LOC107560694)


Basic Information

Item Value
gene id ccdc50a
gene name ccdc50,si:ch73-6k16.1,LOC107560694
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 12056820 ~ 12077871 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222476.1
acacacacacacacacggagctCAGTTTTTCCTTCgcagtttgtgtgtatgtgtgtgtgcgcgcgagcTCGCAATATTCATCTGCCGAGGGTACAGAGGGAGGGACGGACAGAAACCTCGGCTGGCGACAGAAACCAATCAGAGCGACACATTAGCGAAGACATCGATCGGGATTTATTTATCTGACGGAAACCGCCATCCGTCTGTCAAACAATAACCTTCAGAAACCCCAGAGAAACATTACGCGCCCGCGACGACATGGCTGATTTTAGTATTGATCAGAACAACCTGCCTGGCGTAAAAGAGGtCTGCCGGGACTTCGCCGTGTTAGAAGACCACTGTCTGGCCCACAACCTTCAGGAACAGGAAATCGAGAGCCACCTGGCCTCCAACGTCCACAAGAGCCGCCTGGTGCAGCAGGACCTGCAGGTGGCCAAACGTCTGCAGGAGGAAGAGGACAAGCGGGCCAAAGCCGAGAGCCAGAGACAGCACCGCCACCTGGAACGCATCGACAATGAAATGGCTCAGGAGATTCAAGAACAACTGGTCTGGCAGGCTGAACAGCAGCGGCAGCAGGAGGAGAAAGACGAGGCCATCGCCCGGAAGCTGCAGGAGCGAGAGATGAAAGAGGAGAGGAAACGGCAGAAGCAGATGGAAGGAAACCCAGAGGAGTACTACGAAGAGAAAGCCTCCCGATTTCCACCGGACCGGCGAGAGCCAAAACCCCGTTCCGCTTCTCCAGGTTACAGAAAAGAGAAGAATCACGACTATGATCGGATTCTTTCCCCGTACAACTCTCCTGAACCCGACAGAAAAAGATATCCCAATAGCCGTAGCCGATATCCGGAATGTGAGCCCGTTGAGTTCAGCCGATCTAGGAATCCGGAGAGTCCGAGCAAGTACTGCTCACCTGAGCGACGaatcaaagaaagaaacaaacctCTCGATCTCGATCACACTGAACCACGTAGAAAAAAGAAGCAAGATCAATGGGACGACCCGGAGCTAGTGGTCCGCCGGAAAGAGAGGCCTCAGAGGGATTACTCTGCCGGGCAGGACAAGGAGAGGATCAGGGATCGAGAACGAGAATGGGATGGACGGAGAGCCAAGGAAAGGTCGAGAGATCGCAACCGGACAAGAAGCCAAGATCGATTGTTTAGCGGCATTGACAGAGGCAGGGACGTGGACCGGGAGATGGACCAAAATGGCTACGGACATGGTAGCAGAGAGAGGCAAAGAGAACGAGGTAGAGATGGGAACAGAAGGAGGCACAGAAGCAGGGAGCGTGACCTGGACGATTACGGTCTCGTCCCGACTAGAGGAAGCTCTGAAGTAAGCCTGGAGTGGGAGGATCACAAGAACAGGCCGAGACTCCCGTCAGGTCCTAATGAGGTGTTTGAGGAGCCCGTCCCCAGAGGTCCCTCAAACGAGGGCCGGTCCCCTGGTCATTCTCCCAGAGAGAGAGGTCGGAAGCCGCGAGGAGAATATGGCATGAAGGAAGCAACACACGGACTGGCCCAGTTAGACCTACAAGACCAGGAGCTCATAGACTTAGAGGTGGCCCGCAAGCTACAGGATGAAGAAATCAAGgCGAGTCAGTTCGACAGACGAGCCGCTCAGGTCGCACAAGACGAGGAAATGGCACGACGGCTAATGGAGGAAGAAAAAAGGGAGTATAAGAGGTCGAAAGATAAGGACAAACAAGTAATGGAGAGACGACGGCCTGAGGTGGAGTATAAGCCAGTGCAAGAAGAAGTGGTACGACCACGAACGAGAGAAGAGCCGCCGCGCATCAGAGAGGACGAGTACCAGAGAGCGCGCAACCACAAACCCGCCAGGCCGCCTCCTCCTACACAGCACTACGAGAACATAAACCCGAGCTACGCCTATGCGGACCCCTACTCCCCTCGTCCTCCATCAAGACCAGAGGCGGCGTACAAAGGTGCCTACTACAGACAGTGACCACAAGCCTCCACTGCTGTCCAATCATGAGTCCGTTCGGCCCTTTATTTTGCGAATCAGTAAAGGATGAAATGATTCATAAATACTTTGAGGCTTTCTGCAGAAGCTactgacactttattttattctttcccTATCGGGCTCATCTCTTCGGATGAGCCGACGTCGTCTCTTCGTGTCGTGAAAGAGTCTTTTACCCTGGAGCTACGGACTACTGGGTGACGGGGACCGTTCCTGTTTGCTTCTCATGTTCTCGTCTTATCGTGGATGACCGGACAGGAAGGGATCTACTGCACAGCTCTCTCGAATATCCCTTTTCTTTCGGCGTCTGTAACAAAGCTTCGTCTCGATTCCATGTTGAGTTCAGGATTTACGGCGGTTTTCCACTTTTCCGTGCGTTTTTATTTAACGGAAAACGTGCTTGGATTTCTATAAAGCGCACTTTTGtgctatatatttattgattttattttgagaggatgtattttattttgaatcgcTGATTGTTTTTACCCTCCCCCCCCCTGAAGATCTGAAGAGACTGTTAGCATAAACCAGGAGCGATCCGATTTCTGGAGATGCAAAATTTCACATATCTCAACGACTTAAGAAGCGGGTTTCGAGGTGAGGTTGTCGGCGCTTCTTCATTTTGCCTTCATATCATTCACGAGAGACTCTTTACCGGCATTGCGGGCTCGTGTACAGCTAGGGTTCGAGACGCTCAGCCTTCGGGTGTCTTTGTATCTGCGACATTTCCCCCTTCCCCCGCAGTGTCGGTAGCGATTCCCTCATCTTCGTCGTAGGTGCTTCAGGACCTACTGATATGCTCCAGTGTTCAAGTGCATGCTGGCTGAATGTGAACTTTATGGGGTCCATATGAATCTTGTCCAAAAAGTGGCCACAAACGCATCtttttcgtttatttttatatatttttacgtttttatttataattcagtACAAATCCAAAATACTAGTTTTAAAGCATGTAGTAGCATTGCTGTTGGCACAGATGTAAACGGTTTTCTCGCTTGCTGCATCATATGCAATCCATGCTAGTATATCAGTGTTCGGATTTGCCGTGCTTTGCATTCGGTGGCGAACTTACTTTAAGCAGGGACATAAAAACCGACCAGCAAACGGATCAAGGCAGCAAACAAGTGACTATAGCGTTCATCTGGCACTTTCTATGAGTGGAGTACAAAATAAGGCCTGAAACTCTTATTAAggttatgtgttttattttgtatttttattttttcagcaaaaaaatctgtttttttttttaatttaaaacctttAGAACTTGTCTAAATCAAAATTATTCGATCCTAATTtgtcttattgttattatttttttttttttttagcaattgtTTACTTCTTACAGAGAGCCTAAGATAAAGTGATCagaaattgtatataaatatataaactacaaatatacaaaaacataatttagctTTGCTAATTTGGGGCCAAATGCTATTTTAAGCAAAcattatcaataaaaataagtgcacagtctttttttgtgtttttatttattttttttccactacatttttttttttttgcatttcttttattgCTTTGGTTTGTatagcttttgttttgtttttttagtttgtgtgtAACGTGATATCTTTTGCCAGCTTGTTTATTTCAAGCAAATagaaaatagcaaaaattaaaaaaacaataaacctAAACAATAACTTCTAATTCAGTTGAAGCTCTCTAGCTGGGGACCGGAAACCAATTGTtcagtatttaaaatagattcGACAGTATTACGATGCTTTTAACAttccacaaaataataaaactagcttatctaatgtttttctttttttttgtcttgtttaacTTTCCCTTGAAACAGACCGATTTTGCACCTCTTTATGGAAAGTGCCGCACGCTCATCACTCTACAAGggcatttgttttctttccttacTGCTCAGTCATCGCTCGCGTTCCGTGttcctgtcaaaataaatgcgTTTTAAAGGGATCGCGTTCCGCTCGGCCTTTTGGGAACGGGAATACGATCGCGCGGGCTCCATGTAGCATCCTGTACAGATACGACTAAAGACAGCAGCTACTTTTTGTATCGCATTAGTGCCTCTATACGACCGGCGTCCGACCGCTTCTGCTCTCGAGAACGATTCATTCGGTGCGTTCCGGTGAAAGGCGTGGCCTGAAACGCGTCCAATAAACACGTAGGGAAAATCTCTTCTGTTGCCGCGCTGCTACGCTTAAAAGGTGATTTGAGACCATTTTTCTTGTGCAGTCGTATTACAGTTTCGAATCACTTtacgtgtgtgttttagtgatgaatgtgcatatatatatatctctctctctttttcagtgCGGTGTCGATCCGGCGCGCGTAGTAGTCGAAAAACATAATTGTACGTCGCAATTCTGATACTAATTGGCTGGATGGGGTTTTGTGCCAAATGTCGTTCAACATTCAGGGATTTTAACCAAGTATTgctgtaaacaaacacaaacgaACTGAACTTTTAGCACCCGATACGCGACAGAGACGAGGTCCACGCCGGTTTGTTTCACAATCAGCTGCTGCTGGAAACGGTTTTGCGGCCGGCGAAAGTGTTTGTATCTTGCACATTCTCATAGCTTCCACTGGCCAACTGTAAATAccaaataaatgacttttaaaggA
>XM_043222477.1
cacacggagctCAGTTTTTCCTTCgcagtttgtgtgtatgtgtgtgtgcgcgcgagcTCGCAATATTCATCTGCCGAGGGTACAGAGGGAGGGACGGACAGAAACCTCGGCTGGCGACAGAAACCAATCAGAGCGACACATTAGCGAAGACATCGATCGGGATTTATTTATCTGACGGAAACCGCCATCCGTCTGTCAAACAATAACCTTCAGAAACCCCAGAGAAACATTACGCGCCCGCGACGACATGGCTGATTTTAGTATTGATCAGAACAACCTGCCTGGCGTAAAAGAGGtCTGCCGGGACTTCGCCGTGTTAGAAGACCACTGTCTGGCCCACAACCTTCAGGAACAGGAAATCGAGAGCCACCTGGCCTCCAACGTCCACAAGAGCCGCCTGGTGCAGCAGGACCTGCAGGTGGCCAAACGTCTGCAGGAGGAAGAGGACAAGCGGGCCAAAGCCGAGAGCCAGAGACAGCACCGCCACCTGGAACGCATCGACAATGAAATGGCTCAGGAGATTCAAGAACAACTGGTCTGGCAGGCTGAACAGCAGCGGCAGCAGGAGGAGAAAGACGAGGCCATCGCCCGGAAGCTGCAGGAGCGAGAGATGAAAGAGGAGAGGAAACGGCAGAAGCAGATGGAAGGAAACCCAGAGGAGTACTACGAAGAGAAAGGTCGGAAGCCGCGAGGAGAATATGGCATGAAGGAAGCAACACACGGACTGGCCCAGTTAGACCTACAAGACCAGGAGCTCATAGACTTAGAGGTGGCCCGCAAGCTACAGGATGAAGAAATCAAGgCGAGTCAGTTCGACAGACGAGCCGCTCAGGTCGCACAAGACGAGGAAATGGCACGACGGCTAATGGAGGAAGAAAAAAGGGAGTATAAGAGGTCGAAAGATAAGGACAAACAAGTAATGGAGAGACGACGGCCTGAGGTGGAGTATAAGCCAGTGCAAGAAGAAGTGGTACGACCACGAACGAGAGAAGAGCCGCCGCGCATCAGAGAGGACGAGTACCAGAGAGCGCGCAACCACAAACCCGCCAGGCCGCCTCCTCCTACACAGCACTACGAGAACATAAACCCGAGCTACGCCTATGCGGACCCCTACTCCCCTCGTCCTCCATCAAGACCAGAGGCGGCGTACAAAGGTGCCTACTACAGACAGTGACCACAAGCCTCCACTGCTGTCCAATCATGAGTCCGTTCGGCCCTTTATTTTGCGAATCAGTAAAGGATGAAATGATTCATAAATACTTTGAGGCTTTCTGCAGAAGCTactgacactttattttattctttcccTATCGGGCTCATCTCTTCGGATGAGCCGACGTCGTCTCTTCGTGTCGTGAAAGAGTCTTTTACCCTGGAGCTACGGACTACTGGGTGACGGGGACCGTTCCTGTTTGCTTCTCATGTTCTCGTCTTATCGTGGATGACCGGACAGGAAGGGATCTACTGCACAGCTCTCTCGAATATCCCTTTTCTTTCGGCGTCTGTAACAAAGCTTCGTCTCGATTCCATGTTGAGTTCAGGATTTACGGCGGTTTTCCACTTTTCCGTGCGTTTTTATTTAACGGAAAACGTGCTTGGATTTCTATAAAGCGCACTTTTGtgctatatatttattgattttattttgagaggatgtattttattttgaatcgcTGATTGTTTTTACCCTCCCCCCCCCTGAAGATCTGAAGAGACTGTTAGCATAAACCAGGAGCGATCCGATTTCTGGAGATGCAAAATTTCACATATCTCAACGACTTAAGAAGCGGGTTTCGAGGTGAGGTTGTCGGCGCTTCTTCATTTTGCCTTCATATCATTCACGAGAGACTCTTTACCGGCATTGCGGGCTCGTGTACAGCTAGGGTTCGAGACGCTCAGCCTTCGGGTGTCTTTGTATCTGCGACATTTCCCCCTTCCCCCGCAGTGTCGGTAGCGATTCCCTCATCTTCGTCGTAGGTGCTTCAGGACCTACTGATATGCTCCAGTGTTCAAGTGCATGCTGGCTGAATGTGAACTTTATGGGGTCCATATGAATCTTGTCCAAAAAGTGGCCACAAACGCATCtttttcgtttatttttatatatttttacgtttttatttataattcagtACAAATCCAAAATACTAGTTTTAAAGCATGTAGTAGCATTGCTGTTGGCACAGATGTAAACGGTTTTCTCGCTTGCTGCATCATATGCAATCCATGCTAGTATATCAGTGTTCGGATTTGCCGTGCTTTGCATTCGGTGGCGAACTTACTTTAAGCAGGGACATAAAAACCGACCAGCAAACGGATCAAGGCAGCAAACAAGTGACTATAGCGTTCATCTGGCACTTTCTATGAGTGGAGTACAAAATAAGGCCTGAAACTCTTATTAAggttatgtgttttattttgtatttttattttttcagcaaaaaaatctgtttttttttttaatttaaaacctttAGAACTTGTCTAAATCAAAATTATTCGATCCTAATTtgtcttattgttattatttttttttttttttagcaattgtTTACTTCTTACAGAGAGCCTAAGATAAAGTGATCagaaattgtatataaatatataaactacaaatatacaaaaacataatttagctTTGCTAATTTGGGGCCAAATGCTATTTTAAGCAAAcattatcaataaaaataagtgcacagtctttttttgtgtttttatttattttttttccactacatttttttttttttgcatttcttttattgCTTTGGTTTGTatagcttttgttttgtttttttagtttgtgtgtAACGTGATATCTTTTGCCAGCTTGTTTATTTCAAGCAAATagaaaatagcaaaaattaaaaaaacaataaacctAAACAATAACTTCTAATTCAGTTGAAGCTCTCTAGCTGGGGACCGGAAACCAATTGTtcagtatttaaaatagattcGACAGTATTACGATGCTTTTAACAttccacaaaataataaaactagcttatctaatgtttttctttttttttgtcttgtttaacTTTCCCTTGAAACAGACCGATTTTGCACCTCTTTATGGAAAGTGCCGCACGCTCATCACTCTACAAGggcatttgttttctttccttacTGCTCAGTCATCGCTCGCGTTCCGTGttcctgtcaaaataaatgcgTTTTAAAGGGATCGCGTTCCGCTCGGCCTTTTGGGAACGGGAATACGATCGCGCGGGCTCCATGTAGCATCCTGTACAGATACGACTAAAGACAGCAGCTACTTTTTGTATCGCATTAGTGCCTCTATACGACCGGCGTCCGACCGCTTCTGCTCTCGAGAACGATTCATTCGGTGCGTTCCGGTGAAAGGCGTGGCCTGAAACGCGTCCAATAAACACGTAGGGAAAATCTCTTCTGTTGCCGCGCTGCTACGCTTAAAAGGTGATTTGAGACCATTTTTCTTGTGCAGTCGTATTACAGTTTCGAATCACTTtacgtgtgtgttttagtgatgaatgtgcatatatatatatctctctctctttttcagtgCGGTGTCGATCCGGCGCGCGTAGTAGTCGAAAAACATAATTGTACGTCGCAATTCTGATACTAATTGGCTGGATGGGGTTTTGTGCCAAATGTCGTTCAACATTCAGGGATTTTAACCAAGTATTgctgtaaacaaacacaaacgaACTGAACTTTTAGCACCCGATACGCGACAGAGACGAGGTCCACGCCGGTTTGTTTCACAATCAGCTGCTGCTGGAAACGGTTTTGCGGCCGGCGAAAGTGTTTGTATCTTGCACATTCTCATAGCTTCCACTGGCCAACTGTAAATAccaaataaatgacttttaaaggA

Function

symbol description
ccdc50 Enables ubiquitin protein ligase binding activity. Acts upstream of or within sensory perception of sound. Located in cytosol. Implicated in autosomal dominant nonsyndromic deafness 44 and mantle cell lymphoma.

NR:

description
PREDICTED: coiled-coil domain-containing protein 50 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222476.1 True 4656 mRNA 0.46 12 12056820 12077871
XM_043222477.1 False 3868 mRNA 0.44 11 12056831 12077871

Neighbor

gene id symbol gene type direction distance location
uchl5 uchl5,LOC107664699,LOC107655412 coding upstream 30068 12022117 ~ 12026752 (+)
glrx2 glrx2,LOC107664942,LOC107560687 coding upstream 35184 12019242 ~ 12021636 (+)
b3galt2 b3galt2,LOC107741544,LOC107715722,LOC107564918,LOC107664691,LOC107560698,LOC107655413 coding upstream 52964 11997220 ~ 12003856 (+)
LOC122328196 mrpl14,LOC107676385 coding upstream 263655 11792550 ~ 11793165 (+)
LOC122327862 NA coding upstream 264362 11787586 ~ 11792458 (+)
LOC122327174 LOC107741537,LOC107564920,LOC107655355,LOC107715710 coding downstream 4550 12082421 ~ 12084561 (+)
p3h2 p3h2,LOC107664742,LOC107564922,LOC107715694 coding downstream 9294 12087165 ~ 12122997 (+)
LOC122327103 NA coding downstream 47622 12125493 ~ 12130315 (+)
wdr47b wdr47b,wdr47,LOC107741541,LOC107664763,LOC107655405,LOC107715726,LOC107560691,LOC107564929 coding downstream 54097 12131968 ~ 12144436 (+)
clcc1 LOC107664769,LOC107741532,LOC107564923,LOC107655407 coding downstream 68489 12146360 ~ 12152024 (+)
G151999 NA non-coding upstream 8555 12045852 ~ 12048265 (+)
G151976 NA non-coding upstream 50238 12006268 ~ 12006582 (+)
G151972 NA non-coding upstream 64020 11992590 ~ 11992800 (+)
G151936 NA non-coding upstream 189279 11867082 ~ 11867541 (+)
LOC122327899 NA non-coding upstream 270109 11777483 ~ 11786711 (+)
G152015 LOC107570371,LOC107664873 non-coding downstream 138576 12216447 ~ 12216846 (+)
G152016 LOC107733205,LOC107563524,LOC107655402,LOC107715731 non-coding downstream 161237 12239108 ~ 12239444 (+)
G151983 NA non-coding downstream 174970 12252841 ~ 12253286 (+)
G152028 NA non-coding downstream 228683 12306554 ~ 12331845 (+)
G152068 NA non-coding downstream 348885 12426756 ~ 12426972 (+)
LOC122327134 senp7,si:dkey-100n23.3,LOC107748206,LOC107600307,LOC107655520,LOC107571594,LOC107717676,LOC107704544,LOC107566043,LOC107704674 other upstream 221686 11826565 ~ 11835134 (+)
LOC122327289 capn8,LOC107565180,LOC107755343,LOC107722658,LOC107655376,LOC107655329,LOC107566058,LOC107571859 other upstream 231613 11822934 ~ 11825207 (+)
mier2 LOC107729715,LOC107593358,LOC107676949,LOC107699399,LOC107719562,LOC107586401 other upstream 728590 11318107 ~ 11328230 (+)
peak3 LOC107676959,LOC107729697,LOC107593354,LOC107655164,LOC107586433,LOC107719638,LOC107593339 other upstream 1061876 10935035 ~ 10994944 (+)
si:dkey-172o19.2 LOC107729689,LOC107676945,LOC107596881,LOC107719578 other upstream 1134789 10918089 ~ 10922031 (+)
LOC122327107 LOC107563522,LOC107715696,LOC108430069,LOC108271041,LOC105898241 other downstream 97816 12175687 ~ 12189006 (+)
G152032 NA other downstream 215529 12293400 ~ 12294717 (+)
G152043 LOC107741571 other downstream 267335 12345206 ~ 12345750 (+)
G152065 LOC107716432,LOC107655331,LOC107575070,LOC107715704,LOC107570368,LOC107755334,LOC107659303 other downstream 331435 12409306 ~ 12423922 (+)
LOC122327156 NA other downstream 989543 13067414 ~ 13098756 (+)

Expression


Co-expression Network