LOC122327899


Basic Information

Item Value
gene id LOC122327899
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 11777483 ~ 11786711 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006247734.1
AGTCCTCACTGGCTAATCTTTATGGAGTCAACTTCACTGACAGAGTTATTGGAAATAGGGGATGCTGGGAGAAAGAGCGGAGGAGGCAGCGAGTGTTTTGAAATGCAAGTGCAGCAGCAGCTCCCAGTCCTGTGATGGGCAACATGCCGCCCAATGACGGCATGCCAGGTGGACCCATGCCTCCCGGCTTCTTTCAAGGCCCACCCGGGTCACAACCATCACCACACTCACAGCCCCCTCCACACAACCCTAACAACCCCATGATGGGGCCACATGGCCAGGTAAGACCCCTTGATCCCTATTTTTGTGTACTTCCTCACACATAACCTGTAGAATAGGCATGGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006247734.1 True 346 lncRNA 0.53 3 11777483 11786711

Neighbor

gene id symbol gene type direction distance location
LOC122327737 LOC107717980,LOC107676979,LOC107719556,LOC107699417,LOC107586407 coding upstream 241742 11522004 ~ 11535741 (+)
LOC122327738 LOC107717981,LOC107676948,LOC107593360,LOC107699418,LOC107586443,LOC107719634 coding upstream 264548 11507461 ~ 11512935 (+)
tle2a tle2,LOC107699413,LOC107586403,LOC107593318,LOC107729686,LOC107719561,LOC108430092 coding upstream 395746 11353277 ~ 11381737 (+)
plpp2b plpp2b,LOC107676990,LOC107593320,LOC107729714,LOC107719563,LOC107586402,LOC107699401 coding upstream 432469 11330705 ~ 11345014 (+)
shdb shdb,LOC107676987,LOC107729709,LOC107719565,LOC107586400 coding upstream 481960 11268948 ~ 11295523 (+)
LOC122327862 NA coding downstream 875 11787586 ~ 11792458 (+)
LOC122328196 mrpl14,LOC107676385 coding downstream 5839 11792550 ~ 11793165 (+)
b3galt2 b3galt2,LOC107741544,LOC107715722,LOC107564918,LOC107664691,LOC107560698,LOC107655413 coding downstream 210509 11997220 ~ 12003856 (+)
glrx2 glrx2,LOC107664942,LOC107560687 coding downstream 232531 12019242 ~ 12021636 (+)
uchl5 uchl5,LOC107664699,LOC107655412 coding downstream 235406 12022117 ~ 12026752 (+)
G151906 NA non-coding upstream 225172 11551893 ~ 11552311 (+)
G151905 NA non-coding upstream 225694 11551466 ~ 11551789 (+)
G151903 NA non-coding upstream 226613 11550194 ~ 11550870 (+)
G151841 NA non-coding upstream 309209 11465863 ~ 11468274 (+)
G151832 NA non-coding upstream 350149 11426960 ~ 11427334 (+)
G151936 NA non-coding downstream 80371 11867082 ~ 11867541 (+)
G151972 NA non-coding downstream 205879 11992590 ~ 11992800 (+)
G151976 NA non-coding downstream 219557 12006268 ~ 12006582 (+)
G151999 NA non-coding downstream 259141 12045852 ~ 12048265 (+)
G152015 LOC107570371,LOC107664873 non-coding downstream 429736 12216447 ~ 12216846 (+)
mier2 LOC107729715,LOC107593358,LOC107676949,LOC107699399,LOC107719562,LOC107586401 other upstream 449253 11318107 ~ 11328230 (+)
peak3 LOC107676959,LOC107729697,LOC107593354,LOC107655164,LOC107586433,LOC107719638,LOC107593339 other upstream 782539 10935035 ~ 10994944 (+)
si:dkey-172o19.2 LOC107729689,LOC107676945,LOC107596881,LOC107719578 other upstream 855452 10918089 ~ 10922031 (+)
onecut3a onecut3,onecut3a,LOC107596910,LOC107676954,LOC107586457,LOC107719659,LOC107655183,LOC105938949 other upstream 885460 10874428 ~ 10892023 (+)
G151620 NA other upstream 940118 10806052 ~ 10837365 (+)
LOC122327289 capn8,LOC107565180,LOC107755343,LOC107722658,LOC107655376,LOC107655329,LOC107566058,LOC107571859 other downstream 36223 11822934 ~ 11825207 (+)
LOC122327134 senp7,si:dkey-100n23.3,LOC107748206,LOC107600307,LOC107655520,LOC107571594,LOC107717676,LOC107704544,LOC107566043,LOC107704674 other downstream 39854 11826565 ~ 11835134 (+)
LOC122327127 vtg6,LOC107563524,LOC107664867,LOC107715697,LOC107664873,LOC107741562,LOC107570371,LOC107734844,LOC107570369,LOC107664832,LOC107564925,LOC107563523,LOC107715728,LOC107655401,LOC107715731,LOC107655402,LOC107576112,LOC107570370,LOC107734958,LOC107579406 other downstream 223758 12010469 ~ 12276608 (+)
LOC122327107 LOC107563522,LOC107715696,LOC108430069,LOC108271041,LOC105898241 other downstream 388976 12175687 ~ 12189006 (+)
G152032 NA other downstream 506689 12293400 ~ 12294717 (+)

Expression


Co-expression Network