G15546


Basic Information

Item Value
gene id G15546
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 4456197 ~ 4458758 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU17368
GCAGGATACAGTGGAAATAGAGAGCAGGATTGCTAGGTCTGTTAGTAAAATATGTCGATTTTAGTAATCTTTGTTGCATTATATGCCAACGGTGACATTTCAAAAATGGGAAAAAGCAATCCAAAAAGTATTAAAGATATCTCAGTATGATTTAAAGATTCTGGTCCTTAACAAACTTTGATTAACTTTGAAATATTTAATGTTGAAACTAGAAGCTTTTTTTCCTTCTATACCTTTTTTTTCCCTAACATACCCAAACTGAGGCATATTAACTTGCTCTCAAAAGTGTGTTTATAAGAATCTAAAAATATTTGGAAGTAAGGATTTTGTTCATTTCATCAGCTTTTGAAGCTTCCAAGACTTCAAATATGCAGTATCATAATACGTTACTGCATTGACACCCCCATATCTCTAGGATTAAACCATTTAGGGCCTTAAAATATTCCAAAAGAAAAGTTTATTAAGAATGAGAATCTAGAAGGATATAATATTTTTAATAATTTTAGAGTTACAGGCACACAATTTTTTTAAAAACAATATGGCACTCAGACAGGAATGGTCTATCCAACTGTTTTGATAGAAGAAAAAAAAAAAAAAAACAAGATACATTTCTAGTTTCAACATTATTTGATATCCCTTTTTAAAAGAAAAAAGTATCAGCTGTATGCAAAGTGACCCACATTTGGTTTTTGAACATTGAAAATGTCTACAATTTACTAATTTACTCATGGAGATGTCATTACCGAGATCTCCATATCTCTGGAATTAAACCAAAGGGAGTTCATGAATGAAGATACTAGAAGAAAAGTTTGTTAAGAACCAAAATCTAAAAGAATATTAAGATATCTTTAATACTTCTTGAGTTACAGGCTTGCAAACTTTGGGGAAAAAACACAAGAAGTGCTTTTTCCCATTTTTGAACCGTCACCGTTGGCATATAATGCAACAAACATTGATAAAGTCAACAGATTTTATGAATCTCTGTGTAAAAATAAAATAATGATGCTGCCATCTTTCTAAACTCATTTTTACCCCCTGTAATTTGGCTCCTAATCTCAGGGGGTAAATGATCACCTCCCTCTACAAAATAGTGGATTACTCAGTAAATATACATCCATGGCATTTCATATTTTGGATTTCTTCTTCATTTATGCATTTCTTTCAGCAGAAAAAAAAAATTATCAAAAAAAAAAAAAAAAAAATTAGCAGGGGACCTTGGTTGAGTTGACACGGAATGACCCATGAATTCTTTTCTCACAATCAGTTAGGCTTTTAAAACTCCTGTAGTGTGAGCCCGGCTAAGACACAACCACCGCCAAAGCTCTATGAAACTACAGGCCAATTTGCACATGTTTACATACTCTTTTCAAAACTCTGAAACCTAAGTTCAGAGCCTAATAATAAACATAATAAGACAGCAATCTGCTACATCTCTACAGTAATACCATATTAATACCATATGAAATATATTCCAAAACTGAAATACTATCAAAACAATTAGATATAGCTGAACACCTACAAAGGTGTTCGTTTTTCAGTTTCATTACCATCTATACAAAAGGGGAAAACATATACATGGATAATGTTTTTAAAATATTACAACATATTACAACATTTTCCATGTTTTATAGCGGTTGTACCGAATGACCTGATGTTTCATGACATGTTTATGAGCAAGTGAAAACACGAATTTTTCAAATTAGTTTTTCAAGTTAGAGTTAGTTACTTTGCTTCACGACCATGTGGTCCTTTGCAGGTGTCTGAATGATGTCACATCCTGTCACATGATATTGACTGTATGACTTGATCCAAAATGGTCCCTTTATATTGGTTACTCTGAATGACATCAATGAAATTCATTTTTCCGGACATTCTTTCTCATAACAAAGCAACGATTTCTACACATAATTTTAATACCATTTTGTCAATATATGATGTTATAAAATCATGCCAGAATAAAAAAATTATACATTTATTACATTTTAAGATATTTTAATCACAAATGAAATGGCTGTATTGGCCTTTGGACAGTTAAACCGAATGACCTTTTGACACTTCAAAATCTTTAAAATACCTTTATATGTAGCAAAATATAATTAAAACCTTTTGGATTCAATAAAAGTGATCTAGTTTTACTACCTTACATAATTTGGATCTCATATCTGTTTTTTTTTATTATTATTAAGGCCTTTGGACAAGAAAAAAGACCCGTCACATCATTGACCCAGTTATAGTCGTCGACTAAGGTCCTTCATTTTAACAGTATAACATATAATGTTTATTGGAAGAGAATACATTTACAATTAGACTTTGTAATGTTATATTTGATATATGTATGATATATCTCCTTATGGCATACTGTATCATTACAATTCCTCATTTGAAAGTCACTTTTGCTCCTGTTAAATTTAGGAAGGATAAAAAAAAAAAATCAATCTGGAAAACACTCTGTAGCATCAGACTGGATAGATCTCCACACTACTGTTAGTTACCTGTATTCCATGTTGGCCTTTCCAAAATTTTGTATCCTTCCCTCCATGTGTGAAACAGATAAATCGAACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU17368 True 2562 lncRNA 0.36 1 4456197 4458758

Neighbor

gene id symbol gene type direction distance location
CI01000001_04402985_04419845 NA coding downstream 36320 4402780 ~ 4419877 (-)
CI01000001_04395469_04399381 FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A coding downstream 56393 4392314 ~ 4399804 (-)
CI01000001_04378975_04384527 SDCBP2, SDCB1, SDCBP coding downstream 71611 4378885 ~ 4384586 (-)
CI01000001_04343042_04345953 NA coding downstream 109613 4342041 ~ 4346641 (-)
CI01000001_04334653_04338081 NA coding downstream 117428 4334163 ~ 4338769 (-)
CI01000001_04465168_04466295 CDC42.L, CDC42L2, CDC42P6, CDC42 coding upstream 6054 4463257 ~ 4466918 (-)
CI01000001_04468566_04523431 DNMT3BB.1 coding upstream 9451 4468209 ~ 4523431 (-)
CI01000001_04726550_04727511 PDPFB, PPDPFB, PPDPF coding upstream 267646 4725927 ~ 4728210 (-)
CI01000001_04732844_04744038 NA coding upstream 274086 4732844 ~ 4744038 (-)
CI01000001_04746153_04754209 NA coding upstream 287375 4746133 ~ 4754209 (-)
G15539 NA non-coding downstream 5736 4450209 ~ 4450461 (-)
G15625 NA non-coding downstream 6778 4448865 ~ 4449419 (-)
G15609 NA non-coding downstream 102870 4353081 ~ 4353327 (-)
G15608 NA non-coding downstream 104342 4349922 ~ 4351855 (-)
G15544 NA non-coding upstream 2217 4460975 ~ 4461433 (-)
G15537 NA non-coding upstream 2899 4461657 ~ 4461912 (-)
G15638 NA non-coding upstream 108986 4567744 ~ 4568009 (-)
G15703 NA non-coding upstream 172008 4630766 ~ 4631671 (-)
CI01000001_02258523_02262621 NA other downstream 2158985 2258442 ~ 2263103 (-)
G14228 NA other downstream 2399719 2055974 ~ 2056478 (-)
G14219 NA other downstream 2461299 1994210 ~ 1994898 (-)
G14104 NA other downstream 2688739 1763669 ~ 1771468 (-)
G15736 NA other upstream 342143 4800901 ~ 4801395 (-)
G16332 NA other upstream 491931 4950689 ~ 4957842 (-)
G16462 NA other upstream 764019 5222777 ~ 5229585 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G72775 NA non-coding NC_053118.1 CM020915.1 16175094 ~ 16181930 (+)
tiger barb (Puntius tetrazona) G65750 NA non-coding NC_056706.1 CM032075.1 20926611 ~ 20926980 (-)