mafba (mafba,LOC107680735,LOC107562627,LOC107557486,LOC107703617,LOC107713570)


Basic Information

Item Value
gene id mafba
gene name mafba,LOC107680735,LOC107562627,LOC107557486,LOC107703617,LOC107713570
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 1699034 ~ 1704576 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU228063
CCGGCGTGCGCTCCGCGACAACTGCTCTATGAAGCATCTCTGAGCTGATTTTATTTCTCTTATTCATTCCTAAAAATCGTAGGATGGGAATCTCATTAGGCCAAACAAGCACGCATCGACACTTTTTCCGCTGTCCATAAGCGAGAGGATCACTTAATAGATCATTAACCACCAATATGCTGCTGACATGAGAGTTTTTCAGCATCTCGTCTccattagagagagagagagagagagagaggcaaagCAGCAGCGGCGGAGAGTCTGAGGGGATCAGAGCGCGTGACGGGGCCCGGCGCCGCGCGTGACGGGGCCCGGTATACCGGCAGGACCAGACAGGTCTCCTCGACCTCGATCTTTTGGAGTATCTGGCCTTTATGGGTTTGTATGAGTTAACATAATTAACAGCTGGCGTTGAGGTTGACACTTTTTATTTGAGATGTGGGTGAGTAAAATACGCAGGGAATATGTAATAAATAGTGATAgctgataaataattaaagtgcGATTATACACACGACATGTATCGAATAAGGACTCGTGCGTATCGGTAAGTGacgcttaaataaaataaacatgcgTCTTCGTATCGTATTTTTAGTAGTGAACTGACTGGGTCTTCGTTTTTAGCGGGAAGTTAATTCTCTTAAAGTTCTGATATTAAATTAGGGATCGTAAAACGGCCAAAAGAAGGTTAGGAGAAAACCTCGTTGACCGAAGAAAgagatgtaaatgtaacatgCTCTTTgaagcagaaataaaataatagttagGTTTAGCAGCCTACTAATTAGTCACGCTGGCATTTAAAGCCCACTTAACGAAATGGCCGATATTTAAGcgcttttaataaatacttaatGCGTTTTGTGTATGACTTGCGCctgtaacaataataatcaatgGTCTTAAATGGTCTGTAGCCATGCTTGTTATGAAAGATTTGTGTACTCCCGTTTCAGGCCTAAACTTTAAATTCgcagattatttatttgctcTGATAACTCCTCAGAACGAACCCGCTTGTTTTACGCTCCAGCGGCAGCGCGCGAGAGGAGCGCGCGGCAGCGGGGCGCCGCACGAGGGCAGCGTCGGGCGAGTTTTCCTCAATCCGGCGTCACCCGCAGCGCCGCTCCATCCTCTCACATCTGCTCGTCTCGTTGATAACGCGCGAGTCAATAAATATCGCAATAACACGCGCGCCCGGTGGGTCCCGGGCGTCCTCGCTCACGCGAAACACGTAATCTCCAACGCCGACCTCGGATGCGATGTCACCGACGGCGTTTCGCGGTTATACATTTCAACAGACAGCCTGTGCCAAGTAA
>XM_043225076.1
ATAGTGATAgctgataaataattaaagtgcGATTATACACACGACATGTATCGAATAAGGACTCGTGCGTATCGGTAAGTGacgcttaaataaaataaacatgcgTCTTCGTATCGTATTTTTAGTAGTGAACTGACTGGGTCTTCGTTTTTAGCGGGAAGTTAATTCTCTTAAAGTTCTGATATTAAATTAGGGATCGTAAAACGGCCAAAAGAAGGTTAGGAGAAAACCTCGTTGACCGAAGAAAgagatgtaaatgtaacatgCTCTTTgaagcagaaataaaataatagttagGTTTAGCAGCCTACTAATTAGTCACGCTGGCATTTAAAGCCCACTTAACGAAATGGCCGATATTTAAGcgcttttaataaatacttaatGCGTTTTGTGTATGACTTGCGCctgtaacaataataatcaatgGTCTTAAATGGTCTGTAGCCATGCTTGTTATGAAAGATTTGTGTACTCCCGTTTCAGGCCTAAACTTTAAATTCgcagattatttatttgctcTGATAACTCCTCAGAACGAACCCGCTTGTTTTACGCTCCAGCGGCAGCGCGCGAGAGGAGCGCGCGGCAGCGGGGCGCCGCACGAGGGCAGCGTCGGGCGAGTTTTCCTCAATCCGGCGTCACCCGCAGCGCCGCTCCATCCTCTCACATCTGCTCGTCTCGTTGATAACGCGCGAGTCAATAAATATCGCAATAACACGCGCGCCCGGTGGGTCCCGGGCGTCCTCGCTCACGCGAAACACGTAATCTCCAACGCCGACCTCGGATGCGATGTCACCGACGGCGTTTCGCGGTTATACATTTCAACAGACAGCCTGTGCCAAGTAACGTAAACCTTCGCGTTCTTGCAAGCGACGCGAACACGCACGCGCGCGATTTTGCGACCGTTATCGGGATTTATCGACAGTTGCTTTGAAAGTGTCGCGCAAACGCTGGTCGAACTTGCTGACTTGTATTTTAAACCCGCGCggtctgaaataaaacactttcgCGGAACACCTCGCCTCCGCTTTAAACGCGCGACGGAACTCGTTTGGAGCGCGTGCGTTGCTTCGAATTCGAACGGCGAGAAActtttttgggtttgttttcataaaaacgCGACGTTTCGTGCTCGAGCCGTCTTGTGGTCCACGGAACAAACGGCTCCTCGTCAGTTCAGTCGGTCAATACGCGGAACGCCGCTCTCCCTTTCTTCGTCCCGTCAGCTGACAACACACAAACAACGATCATTATGCTAATTCTCCGGCTCTGACTGGTCGCCGGCCTCCTCTGACGTCACGCGAGCGTAGACTATAACAGCGCAGAGGGCTCTGGCGTCCTGCTACAGTCTGAATACTCAGGAGTGAGAGCGAGCTGAACTCTCTGCGGTGCAGAGCTGGACAAACACAGCGCCCATCCGCCTCAACGCTGCTTCGCTGGCTTAAGGACATATTTTGGAGTATCCGGGATCGGGACGGGAGCCCTTGTCCGGTACTCATTTTCGtcctttatttatgttttgagtTCAAGCGCGGCGACGGGACAGAGAGCCGACTTTCTTCGGTGCTGTCCAAAGACTGCAGCTGTCGAGCTCTGCGCGTCCATATGAGGCAAATGTCTTTCGCAGTGCATTAGCTGCCtgcagaaagttttttttattattattattgttatttatttatttcgctTTCTCCAGTTTGAGAACATTTCGAGCGACCCCGTTGCATGCCCCAGCGCTCGAGCGCGTCGCGTTCGGAGACCCATCCAGAAAACTGCATGCGCAAAGAGGGGGAAGAAACGCAAAAGTCGGGTTTCGCGACGCTGGTTAACTCTTTGCTGAAGAACGGGGACACAGGGATGAGCGCTGATCTCGCCATGGGGCCCGAGCTGCCCACCAGCCCGCTCGCGTTGGAATACGTCAATGACTTTGATTTGATGAAATTCGAAGTGAAGAAAGAGGCCATGGCGGGGCTCGACCGCTCCAACATACGGCAGTGCAATCGCCTCCAGCCGCAGGGCTCCGTGTCCTCCACTCCGATCAGCACCCCGTGCAGCTCGGTGCCGTCCTCCCCGAGCTTCAGCCCCACGGAGCAGAAGAACCATCTGGAGGACATGTACTGGCTGCCCAGCGGCGCGTATCCGCAGCAGATCGATCCGCAGACGCTAAGCCTGACGCCCGAAGACGCGGTGGAGGCTCTGATCGGTGCCACGGCGCACGGCCATCCTCCGCCCCCTCATGTGCAGCAGCAGTTGCAAGCGGGAGGCTTTGATGGATACCGGGGAGCGCACCATCACCACCACGGCCACgcgcaacagcagcagcagcagcagcaccaccaccaacaacaacaacaccaacAGCAGCACCAACACCAACAATACGGCGCGATCCCCCATCACCCCGATGACATGCCGGGccaccaccatcaccaccaccaccaccaccacagcCAGGACCCCGACAGCCCCTCTCCTACCTCGCCCGGGTCCCACCAGCAGCTCCACCACcgtcaccaccaccaccaccaccaccccgGCCAGCAGGGTCACCACGGCGCGGGGGGCGGCCTGAACGTGGAGGACCGCTTCTCCGACGAGCAGCTGGTCTCCATGTCCGTGCGCGAGCTCAACCGACACCTGCGGGGCTTCACCAAGGACGAGGTGATCCGCCTGAAGCAGAAGCGCCGGACCCTGAAGAACCGGGGCTACGCGCAGTCGTGCCGCTTCAAGCGCGTGCAGCAGAAGCACGTGCTGGAGAACGAGAAGACGCAGCTCATCAACCAGGTGGAGCAGCTCAAGCAAGAGATCAACCGGCTGGCCCGAGAGAGAGACGCCTACAAACTCAAGTGCGAGAAACTGAGCGGAGCGAACGGGTTCCGCGAGGCAGGATCCACCAGCGACAACCCGTCCTCTCCAGAGTTCTtcatgtgagtgtgtgcgcgcgcgcgcgcgctccaCACGCCCGAGACACTCCGCGCTCGCACGCGCAACGGCAGTAACTCGTATTAGAAGAATAATCCACAAGAAATAATAATCCCGTATGTAATCACCGCCACAGATCTCGGCAACTAAAACGCGAAGAACATGTtagaatgttgttgttttttttttctttctctcctttctttttttctgggaaACGTAGATTAGTTGCTTGTCAGTAGGACTTTTACCCCTTTCGTAGAGACCTCACGTCGAGAAAGAGAAAGCGGAGAACCGGCTTTTGTGTTTAGGATaacttcagatttaaaaaaaaaaaaaaaaaactgctctcTCTCCATCGTCCGGTTTGTTCCCGGTCGTTCGGGAGGGGGGGGGAAAGcgaagcaaagaaaaaaaacgtttgtgcTGAGCAGGGGACAGAAAactttggactttttttttttctttttcccacTTGGCCAGAAAAGTTGAGAGCGCCACAATATGCAAAACCTCCCTGACTTCTCCCGCGTCGCGCGCCCGAGTGAGGGGGAACTTTATGCAACATCTCATCGGTTTATTGCCTgcttggttatatatatatagatatatattaaaaagaaaatgaaaaaaaacgacaaaaacaaacacgtaAATCTGCATTAAGATATTAATCCTGCATGCTGGACATGTATGgtaataatttctattttatacactctctttccttctttctttctctctttctttctttctttctgttcgTTACGTATCATAAAGAGCATGTTTTTATCTTTAGCTCTTTTTTTGGGGGATATGAGACTGGCTCTCCGGTCGCTCATCGTATGGACTTGTAAATATACGCGACAGCAAACCCACAAATCGACATCGAAGAGCTGATTGTTCTCCAGACTTTTCCGATTggcttcatgttttttttttttttttttttcgggaaCGGATTTCCAGTAACGGGGCATTTTTGCGGTTGCATTTAAAGCaagcaaactttgtaaaagaAGCGCACTTTTTTTCGGAGGgggacgtttttttttgttttttttggtattgGCAGATTTCGACTTTTtgattgtttcttttgtttttttttttttttttagcggaAACCGCCTTTGAGGGAGACGTTGCGCACGCGCGCGTTTGGTCCTAGGTGGGTTTAAAGCACGCCTTTCAGTTGAACTGGTGCTCATAGTCTCACGTCTAGTTGTAGCAGGACacgagagagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgtgagtgtgcgtgcgcgcgcgcgcgcgtgtgtttTCCGTCTTCACGCAGGCTGTTGCATAACCTATTGCTATTCTATAACATAAGCAATACTTATAGGTcgtatcttttttttctttttttttcggaTGGGTAGGATTTCAACGGACGGGCACACTTTCATCGACATTTTTTTTTCGAGCTATACGAGCTGCCAGTTTTATAAACCAACATTTCAAACTGTAGTTATTATAATCCAGCTCGAGGGTGTGAGGCTTCCTAAATCAGGGGTTTGTGTATTATCGCCTAACATGAAAACTACGCATGTATTTCAATGGAGAGTTTCAACGatcaatgtttaaatgttttcctttatttttttttctgccggTCAGTAAAAAATAAGGGATTCAGGTTCTGcaaatctcaaaatgaaaaaaaattatatgtctCATGttattgttctgttttttttttctgttttttttttttattattatgtcgAGATTCTGGTTCTGCTGGCCAGAtgcatagtttttattttaatgattaaattaacaAACTTGTCAGATCATATTGAATAAGCATGGTGCTTGCATCTaagaaatattgttaaaaagtcATGCATTTAACGATCTTTTTGGTTTATTACTGATTCAACTGTGTTGAAATCAAATGTAAACTGCAGCAGCgggttgttgttttgtttgttgatttcaTGTATTATGAGGGGATCAATTTTCAAATCTGTttatataaatggaaaaaaaaagagaaatagagTTCAATTCGGACTGTTCCATTCAGGCTGGTTTCTGTTtcgtttttgctgtttttggaaGAAATGGTTTCCTATTTTGCTTATTAAAGTCAGTGAAATGGCA

Function

symbol description
mafba Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including hindbrain development; lymphangiogenesis; and pronephric glomerulus development. Predicted to be active in nucleus. Is expressed in several structures, including hindbrain; hindbrain neural keel; neural plate; renal system; and vein. Human ortholog(s) of this gene implicated in Duane retraction syndrome and multicentric carpotarsal osteolysis syndrome. Orthologous to human MAFB (MAF bZIP transcription factor B).

NR:

description
transcription factor MafB-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0009880 embryonic pattern specification biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09036 MAFB; transcription factor MAFB

RNA

RNA id representative length rna type GC content exon number start site end site
TU228063 False 1325 TUCP 0.47 1 1699034 1700358
XM_043225076.1 True 5067 mRNA 0.48 1 1699510 1704576

Neighbor

gene id symbol gene type direction distance location
rnf114 rnf114,LOC107713569,LOC107724213 coding upstream 41451 1652564 ~ 1657583 (+)
pacsin1a pacsin1a,LOC107680734,LOC107738788,LOC107678076,LOC107571226,LOC107557481,LOC108276336 coding upstream 151149 1520315 ~ 1547885 (+)
nudt3a nudt3a,nudt3,LOC107738789,LOC107678075,LOC107724214,LOC107680732 coding upstream 180605 1513396 ~ 1518429 (+)
opn7b opn7b,LOC107724216,LOC107572883,LOC107567959 coding upstream 216393 1445480 ~ 1482641 (+)
LOC122328894 LOC107736949,LOC107564797,LOC107675168,LOC107684883,LOC107555789 coding upstream 305889 1378512 ~ 1393145 (+)
zhx3b zhx3,LOC107663202,LOC107747727,LOC107703618,LOC107713571,LOC107562626,LOC107557488 coding downstream 236728 1941304 ~ 1952128 (+)
LOC122328839 LOC107549167,LOC107723011 coding downstream 367163 2071739 ~ 2087419 (+)
LOC122328881 NA coding downstream 383736 2088312 ~ 2102681 (+)
ndnf ndnf,LOC107549170,LOC107723023,LOC107698518,LOC107558793,LOC107710242,LOC107669702 coding downstream 583405 2287981 ~ 2304033 (+)
slc34a2b LOC107698513,LOC107570774,LOC107669705,LOC107710230 coding downstream 747114 2451690 ~ 2461440 (+)
G154029 NA non-coding upstream 3003 1695824 ~ 1696031 (+)
G154028 NA non-coding upstream 3438 1695257 ~ 1695596 (+)
LOC122328611 NA non-coding upstream 29440 1663809 ~ 1669594 (+)
G154017 NA non-coding upstream 53234 1644425 ~ 1645800 (+)
G153872 NA non-coding upstream 215322 1483362 ~ 1483712 (+)
G154031 NA non-coding downstream 576 1705152 ~ 1705353 (+)
G154034 NA non-coding downstream 6766 1711342 ~ 1711543 (+)
G154074 NA non-coding downstream 101087 1805663 ~ 1806087 (+)
G154122 NA non-coding downstream 289517 1994093 ~ 1995156 (+)
G154130 LOC107557491,LOC107723017,LOC107663200 non-coding downstream 300756 2005332 ~ 2023144 (+)
hmga1a LOC107738790,LOC107724210,LOC107690106,LOC107567961,LOC107678077 other upstream 173287 1499071 ~ 1525747 (+)
LOC122328339 NA other upstream 418827 1275737 ~ 1280207 (+)
LOC122328753 LOC107704474,LOC107710267,LOC107730816 other upstream 613609 1082847 ~ 1085425 (+)
si:dkey-150i13.2 si:dkey-150i13.2,LOC107736969,LOC107704225,LOC107568482,LOC107684875,LOC107713740 other upstream 906121 785974 ~ 792913 (+)
G153747 NA other upstream 1511065 187140 ~ 187969 (+)
G154092 NA other downstream 247595 1952171 ~ 1954683 (+)
G154108 plcg1 other downstream 259697 1964273 ~ 1965117 (+)
snai1b LOC107694621,LOC107723015,LOC107549169,LOC107558792,LOC107738552,LOC107669687 other downstream 345456 2050032 ~ 2053975 (+)
LOC122328880 LOC107723010,LOC107683284,LOC107694619 other downstream 364092 2068668 ~ 2071399 (+)
LOC122328869 LOC107723021,LOC107694620,LOC107577481 other downstream 425422 2129998 ~ 2132833 (+)

Expression


Co-expression Network